BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00408 (551 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23449-1|AAC24298.3| 488|Caenorhabditis elegans Hypothetical pr... 37 0.008 Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 34 0.059 Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 32 0.32 Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 30 1.3 Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 30 1.3 U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical pr... 29 2.9 U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 2.9 AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 2.9 AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q... 29 2.9 Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 28 5.1 Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical pr... 28 5.1 U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 5.1 AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical ... 28 5.1 Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical pr... 27 6.8 Z74038-7|CAE17835.1| 132|Caenorhabditis elegans Hypothetical pr... 27 6.8 Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 6.8 M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 6.8 U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical pr... 27 9.0 AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 9.0 >U23449-1|AAC24298.3| 488|Caenorhabditis elegans Hypothetical protein K06A1.3 protein. Length = 488 Score = 37.1 bits (82), Expect = 0.008 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVT 158 T +TT T+ T A ET T R +T ++DPTT V T+F T Sbjct: 305 TTSTTTTTSTTTATETPTTTTERPTTTVTQVLDPTTTVTLPTDFPT 350 >Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical protein F56H9.6 protein. Length = 245 Score = 34.3 bits (75), Expect = 0.059 Identities = 21/54 (38%), Positives = 22/54 (40%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 T +TT TT T T P T TT PTT T T T T TPT Sbjct: 70 TTSTTTTTTPTTTTTTT-PTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPT 122 Score = 30.7 bits (66), Expect = 0.73 Identities = 19/54 (35%), Positives = 20/54 (37%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 T T VTT T+ T T TT PTT T T T TT T Sbjct: 46 TTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTT 99 >Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical protein C30H6.11 protein. Length = 460 Score = 31.9 bits (69), Expect = 0.32 Identities = 22/54 (40%), Positives = 23/54 (42%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 T +TT TT T T T TT PTT T T TET TTPT Sbjct: 69 TTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETT-TTPT 121 Score = 31.5 bits (68), Expect = 0.42 Identities = 23/54 (42%), Positives = 23/54 (42%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 T TT TT T ET T TT PTT T T TET TTPT Sbjct: 93 TTPTTTTTTPTTTTETTTTPTTETTTTPTTTT-PTTTTTTPTTTTTETT-TTPT 144 >Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical protein F33E2.7 protein. Length = 174 Score = 29.9 bits (64), Expect = 1.3 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVI---TATE---FVTETVITTPT 182 T TT TT T T T TT P T V T TE F T T++TTPT Sbjct: 107 TTPTTTTTTPTTTTTTPTTTTTTPTTTTTTRSTPLTEVFRTSTTTEAPFFTTTTIVTTPT 166 >Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical protein C30F2.3 protein. Length = 403 Score = 29.9 bits (64), Expect = 1.3 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = -1 Query: 188 QSSGSRNHSFRNEFSSGYNVCRGIYNCSQNCLASECNWQNCFSSISNCGDVSGG 27 + +GS + + N ++ YN N Q ++ NWQN +SN G G Sbjct: 276 RDAGSNDIYYGNANTNNYNNNNNYNNNGQQTYSTSTNWQNNQLGVSNSGAPGSG 329 >U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical protein F18E9.3 protein. Length = 378 Score = 28.7 bits (61), Expect = 2.9 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +3 Query: 18 KTRATTYVTTITDARETVLPITFRG--KAILTTIVDPTTNVITATEFVTETVITTPT 182 KT TT+ T RE+ P T +A++TT V PTT T+ ++ T +T T Sbjct: 131 KTTTTTHAPLTTKMREST-PATHSTTERAVITTTV-PTTTTTEKTKLLSTTPTSTTT 185 >U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical protein F31D5.4 protein. Length = 989 Score = 28.7 bits (61), Expect = 2.9 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +3 Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185 TT TT + TV I TT+ PTT V+T T T +T TA Sbjct: 246 TTPTTTTIASTSTVTSIVTSTTVTSTTV--PTTTVVTTVPTTTATSTSTSTA 295 >AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like protein MTH-2 protein. Length = 971 Score = 28.7 bits (61), Expect = 2.9 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +3 Query: 30 TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185 TT TT + TV I TT+ PTT V+T T T +T TA Sbjct: 228 TTPTTTTIASTSTVTSIVTSTTVTSTTV--PTTTVVTTVPTTTATSTSTSTA 277 >AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 72 protein. Length = 407 Score = 28.7 bits (61), Expect = 2.9 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +3 Query: 21 TRATTYVTTITDARET-VLPITFR-GKAILTTIVDPTTNVITATEFVTETVITTP 179 T +T + IT+ T +PIT + TT +PT T TE VT+ I P Sbjct: 247 TVPSTTLELITEPTSTETIPITTTTAETTTTTSEEPTVTEETTTELVTDVTIALP 301 >Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical protein C49C3.13 protein. Length = 499 Score = 27.9 bits (59), Expect = 5.1 Identities = 18/54 (33%), Positives = 20/54 (37%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 T TT T T E+ T TT PTT +T T ITT T Sbjct: 286 TPTTTTTTPTTTTTESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTT 339 Score = 27.5 bits (58), Expect = 6.8 Identities = 23/54 (42%), Positives = 25/54 (46%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 T TT TT T A T TF+ I TT TT TAT T+ TTPT Sbjct: 313 TTTTTAPTTTTTASTT----TFKTTTITTT-TQTTTPTTTAT--TTKPTTTTPT 359 >Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical protein F22E12.1 protein. Length = 763 Score = 27.9 bits (59), Expect = 5.1 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 84 FRGKAILTTIVDPTTNVITATEFVTETVITTP 179 ++ + LTTI PTT V T TE+V T P Sbjct: 591 YQARMRLTTIPTPTTTVETTTEYVHVPYPTLP 622 >U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical protein C04G6.7 protein. Length = 197 Score = 27.9 bits (59), Expect = 5.1 Identities = 13/52 (25%), Positives = 26/52 (50%) Frame = +3 Query: 3 ARAEYKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVT 158 ++ Y T A + I+ + VLP++ + A++T+ D +T + T T Sbjct: 2 SKIAYSTLAILAIIAISQVQSAVLPVSSKEVALVTSSTDASTTSSSETSIDT 53 >AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical protein F22E12.1 protein. Length = 763 Score = 27.9 bits (59), Expect = 5.1 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 84 FRGKAILTTIVDPTTNVITATEFVTETVITTP 179 ++ + LTTI PTT V T TE+V T P Sbjct: 591 YQARMRLTTIPTPTTTVETTTEYVHVPYPTLP 622 >Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical protein C37A5.1 protein. Length = 512 Score = 27.5 bits (58), Expect = 6.8 Identities = 15/57 (26%), Positives = 23/57 (40%) Frame = +3 Query: 12 EYKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 E K Y+ + + +P+TF +T IVD N+ F+ T I T Sbjct: 57 EQKAGVRKYIDHLDQNLDKCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIAT 113 >Z74038-7|CAE17835.1| 132|Caenorhabditis elegans Hypothetical protein F58B4.6 protein. Length = 132 Score = 27.5 bits (58), Expect = 6.8 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Frame = -1 Query: 140 GYNVCRGIYNCSQNCLASECNWQNCFSSI------SNCGDVSGGSSLIFRSC 3 G N C + SQN + +C NC + + +NC + + GSS++ C Sbjct: 51 GANSCVKTIDYSQNRFSKQCQIGNCTTQLGATQAPANCFNTTSGSSVMGTCC 102 >Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein F29D11.1 protein. Length = 4753 Score = 27.5 bits (58), Expect = 6.8 Identities = 11/34 (32%), Positives = 13/34 (38%) Frame = -1 Query: 140 GYNVCRGIYNCSQNCLASECNWQNCFSSISNCGD 39 G VC G CS S+C + C C D Sbjct: 3893 GSKVCDGTIQCSDGLDESQCTLRRCLPGHRQCDD 3926 >M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related protein protein. Length = 4753 Score = 27.5 bits (58), Expect = 6.8 Identities = 11/34 (32%), Positives = 13/34 (38%) Frame = -1 Query: 140 GYNVCRGIYNCSQNCLASECNWQNCFSSISNCGD 39 G VC G CS S+C + C C D Sbjct: 3893 GSKVCDGTIQCSDGLDESQCTLRRCLPGHRQCDD 3926 >U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical protein F07C3.10 protein. Length = 562 Score = 27.1 bits (57), Expect = 9.0 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +2 Query: 107 YNCRSHDKRYNRY*IRYGNCDYDSHCFGSISAV 205 + C+S +R + Y C YD CF IS + Sbjct: 54 HGCKSFFRRAIIHKTAYPECKYDKMCFSKISRI 86 >AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical protein H02F09.3 protein. Length = 1275 Score = 27.1 bits (57), Expect = 9.0 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = +3 Query: 21 TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182 T ATT T +T TV+ + + TT+V + V+TA TV+T PT Sbjct: 362 TVATTPTTVVTTP-STVVTVPSTVVTVPTTVVTNPSTVVTA----PSTVVTVPT 410 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,906,433 Number of Sequences: 27780 Number of extensions: 166828 Number of successful extensions: 568 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 560 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1123720628 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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