Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00408
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical pr...    37   0.008
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    34   0.059
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    29   2.9  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    29   2.9  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   6.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   6.8  
U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical
           protein K06A1.3 protein.
          Length = 488

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVT 158
           T +TT  T+ T A ET    T R    +T ++DPTT V   T+F T
Sbjct: 305 TTSTTTTTSTTTATETPTTTTERPTTTVTQVLDPTTTVTLPTDFPT 350


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 34.3 bits (75), Expect = 0.059
 Identities = 21/54 (38%), Positives = 22/54 (40%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           T +TT  TT T    T  P T       TT   PTT   T T   T T   TPT
Sbjct: 70  TTSTTTTTTPTTTTTTT-PTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPT 122



 Score = 30.7 bits (66), Expect = 0.73
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           T  T  VTT T+   T    T       TT   PTT   T     T T  TT T
Sbjct: 46  TTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTT 99


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 22/54 (40%), Positives = 23/54 (42%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           T +TT  TT T    T    T       TT   PTT   T T   TET  TTPT
Sbjct: 69  TTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETT-TTPT 121



 Score = 31.5 bits (68), Expect = 0.42
 Identities = 23/54 (42%), Positives = 23/54 (42%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           T  TT  TT T   ET    T       TT   PTT   T T   TET  TTPT
Sbjct: 93  TTPTTTTTTPTTTTETTTTPTTETTTTPTTTT-PTTTTTTPTTTTTETT-TTPT 144


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVI---TATE---FVTETVITTPT 182
           T  TT  TT T    T    T       TT   P T V    T TE   F T T++TTPT
Sbjct: 107 TTPTTTTTTPTTTTTTPTTTTTTPTTTTTTRSTPLTEVFRTSTTTEAPFFTTTTIVTTPT 166


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 188 QSSGSRNHSFRNEFSSGYNVCRGIYNCSQNCLASECNWQNCFSSISNCGDVSGG 27
           + +GS +  + N  ++ YN      N  Q   ++  NWQN    +SN G    G
Sbjct: 276 RDAGSNDIYYGNANTNNYNNNNNYNNNGQQTYSTSTNWQNNQLGVSNSGAPGSG 329


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 18  KTRATTYVTTITDARETVLPITFRG--KAILTTIVDPTTNVITATEFVTETVITTPT 182
           KT  TT+    T  RE+  P T     +A++TT V PTT     T+ ++ T  +T T
Sbjct: 131 KTTTTTHAPLTTKMREST-PATHSTTERAVITTTV-PTTTTTEKTKLLSTTPTSTTT 185


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 30  TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185
           TT  TT   +  TV  I        TT+  PTT V+T     T T  +T TA
Sbjct: 246 TTPTTTTIASTSTVTSIVTSTTVTSTTV--PTTTVVTTVPTTTATSTSTSTA 295


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 30  TTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPTA 185
           TT  TT   +  TV  I        TT+  PTT V+T     T T  +T TA
Sbjct: 228 TTPTTTTIASTSTVTSIVTSTTVTSTTV--PTTTVVTTVPTTTATSTSTSTA 277


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 21  TRATTYVTTITDARET-VLPITFR-GKAILTTIVDPTTNVITATEFVTETVITTP 179
           T  +T +  IT+   T  +PIT    +   TT  +PT    T TE VT+  I  P
Sbjct: 247 TVPSTTLELITEPTSTETIPITTTTAETTTTTSEEPTVTEETTTELVTDVTIALP 301


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           T  TT  T  T   E+    T       TT   PTT    +T     T ITT T
Sbjct: 286 TPTTTTTTPTTTTTESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTT 339



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 23/54 (42%), Positives = 25/54 (46%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           T  TT  TT T A  T    TF+   I TT    TT   TAT   T+   TTPT
Sbjct: 313 TTTTTAPTTTTTASTT----TFKTTTITTT-TQTTTPTTTAT--TTKPTTTTPT 359


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 84  FRGKAILTTIVDPTTNVITATEFVTETVITTP 179
           ++ +  LTTI  PTT V T TE+V     T P
Sbjct: 591 YQARMRLTTIPTPTTTVETTTEYVHVPYPTLP 622


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 3   ARAEYKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVT 158
           ++  Y T A   +  I+  +  VLP++ +  A++T+  D +T   + T   T
Sbjct: 2   SKIAYSTLAILAIIAISQVQSAVLPVSSKEVALVTSSTDASTTSSSETSIDT 53


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 84  FRGKAILTTIVDPTTNVITATEFVTETVITTP 179
           ++ +  LTTI  PTT V T TE+V     T P
Sbjct: 591 YQARMRLTTIPTPTTTVETTTEYVHVPYPTLP 622


>Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical
           protein C37A5.1 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +3

Query: 12  EYKTRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           E K     Y+  +    +  +P+TF     +T IVD   N+     F+  T I   T
Sbjct: 57  EQKAGVRKYIDHLDQNLDKCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIAT 113


>Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical
           protein F58B4.6 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -1

Query: 140 GYNVCRGIYNCSQNCLASECNWQNCFSSI------SNCGDVSGGSSLIFRSC 3
           G N C    + SQN  + +C   NC + +      +NC + + GSS++   C
Sbjct: 51  GANSCVKTIDYSQNRFSKQCQIGNCTTQLGATQAPANCFNTTSGSSVMGTCC 102


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -1

Query: 140  GYNVCRGIYNCSQNCLASECNWQNCFSSISNCGD 39
            G  VC G   CS     S+C  + C      C D
Sbjct: 3893 GSKVCDGTIQCSDGLDESQCTLRRCLPGHRQCDD 3926


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -1

Query: 140  GYNVCRGIYNCSQNCLASECNWQNCFSSISNCGD 39
            G  VC G   CS     S+C  + C      C D
Sbjct: 3893 GSKVCDGTIQCSDGLDESQCTLRRCLPGHRQCDD 3926


>U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical
           protein F07C3.10 protein.
          Length = 562

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 107 YNCRSHDKRYNRY*IRYGNCDYDSHCFGSISAV 205
           + C+S  +R   +   Y  C YD  CF  IS +
Sbjct: 54  HGCKSFFRRAIIHKTAYPECKYDKMCFSKISRI 86


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 21  TRATTYVTTITDARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           T ATT  T +T    TV+ +      + TT+V   + V+TA      TV+T PT
Sbjct: 362 TVATTPTTVVTTP-STVVTVPSTVVTVPTTVVTNPSTVVTA----PSTVVTVPT 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,906,433
Number of Sequences: 27780
Number of extensions: 166828
Number of successful extensions: 568
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)