Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00408
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    26   0.22 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.3  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 1  RHERNIRLEPPLTSPQLLMLEKQF 72
          +H+ N +   P T+ QLL LEK+F
Sbjct: 5  KHKPNRKPRTPFTTQQLLSLEKKF 28


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 122 HDKRYNRY*IRYGNCDYDSHCFGSISAV 205
           +D   NR  +R     YD+ C G  +A+
Sbjct: 330 NDSERNRSPVRPATVQYDTCCQGRATAI 357


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 164 CDYDSHCFGSISAVEF 211
           C Y++HCF      +F
Sbjct: 737 CRYEAHCFALCHCCDF 752



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = -2

Query: 229  KRGRSNEFNCGDGPKAVGVVITVSVTNSVAVITFVVGSTIVVKIALPL 86
            +R   NE  C D     GV+ ++ V++ + ++   +   +V+ + + L
Sbjct: 967  RRLNVNETVCSDYFSQGGVIESIMVSDYLPLVAATLSGVLVLLVIIVL 1014


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 71  NCFSSISNCGDVSGG 27
           NC SSI++ G VS G
Sbjct: 157 NCTSSIASSGVVSAG 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,665
Number of Sequences: 438
Number of extensions: 2168
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)