Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00408
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23290.2 68417.m03357 protein kinase family protein contains ...    28   3.6  
At1g74940.1 68414.m08695 senescence-associated protein-related s...    28   3.6  
At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putat...    28   3.6  
At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containi...    28   4.8  
At4g23290.1 68417.m03356 protein kinase family protein contains ...    27   6.3  
At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r...    27   8.3  
At4g11870.1 68417.m01888 hypothetical protein                          27   8.3  

>At4g23290.2 68417.m03357 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 690

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -1

Query: 209 IQLRRWTQSSGSR---NHSF-RNEFSSGYNVCRGIYNCSQNCLASECNWQNCFSSISN 48
           I LR    S  SR   N  F +  F  G N+  G+  CS+     +C+  +C +S+S+
Sbjct: 43  INLRAMLSSLPSRVKDNEGFYKTPFKPGPNIAHGLGMCSRGTTTQDCS--DCITSVSH 98


>At1g74940.1 68414.m08695 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 222

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 399 IATKTSLMITK*IAMMIPSTRSFPVRSKQKRLSPHSP 509
           ++ +  LMI K   M++P +RS  ++ ++   SP SP
Sbjct: 3   LSKRPHLMIRKLSEMLVPRSRSAAIKPEEYTASPRSP 39


>At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putative
           similar to SIAH2 protein [Brassica napus var. napus]
           GI:7657878; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 224

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 110 CSQNCLASECNWQNCFSSISNCGDVSGGSSLIFRSC 3
           C+Q+     C +  C   +SNC  VS  S+L   +C
Sbjct: 54  CNQSSHEKVCKFVRCSCPVSNCNYVSSYSNLKSHAC 89


>At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 661

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 137 YNVCRGIYNCSQNCLASECNWQNCFSSISNCG 42
           Y  C GI N S  CL  EC   +  +S+ +CG
Sbjct: 361 YGKCNGIENSSLPCLNLEC-CNSLMTSLMHCG 391


>At4g23290.1 68417.m03356 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 600

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 161 FRNEFSSGYNVCRGIYNCSQNCLASECNWQNCFSSISN 48
           ++  F  G N+  G+  CS+     +C+  +C +S+S+
Sbjct: 16  YKTPFKPGPNIAHGLGMCSRGTTTQDCS--DCITSVSH 51


>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1149

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 4   HERNIRLEPPLTSPQLLMLEKQFCQ 78
           HE ++ LEP +TSP L ++++ F +
Sbjct: 742 HEPSVDLEPGVTSPSLKIVKEDFME 766


>At4g11870.1 68417.m01888 hypothetical protein 
          Length = 74

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 54  DARETVLPITFRGKAILTTIVDPTTNVITATEFVTETVITTPT 182
           D+  TV+P       ++  I   TT V   T  VT   + TPT
Sbjct: 30  DSGATVIPAVTPTTTVVPAITSATTTVTAPTMAVTPVTMGTPT 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,339,287
Number of Sequences: 28952
Number of extensions: 153121
Number of successful extensions: 413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)