Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00405
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     89   3e-18
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   3.3  
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)                   28   5.7  
SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 37/86 (43%), Positives = 58/86 (67%)
 Frame = +2

Query: 254 VREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIK 433
           ++E LL  +  +    +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++    +K
Sbjct: 58  MKESLLKGIHEEQDSNVRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELK 117

Query: 434 EAGIRMFTSVPGVFGNRQTENLDVIK 511
           E+ + +F S PGVFGN+Q   L+VIK
Sbjct: 118 ESALNIFCSFPGVFGNQQDHYLNVIK 143



 Score = 27.9 bits (59), Expect(2) = 0.020
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 18 QFYQLLNTLLSTDNDIRSQAE 80
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27



 Score = 27.5 bits (58), Expect(2) = 0.020
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 159 DVRQTAAVLLRRLFSA 206
           +VRQ AAVLLRR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 311 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 427
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 451 VYVCTRCIWK--SSD*KLGCDKGMLISALQPNESMALRTQA 567
           V VC  C  K  S+D  +GCD   L SAL+ ++S +  ++A
Sbjct: 541 VRVCDSCFSKRASTDEGIGCDMSELASALEDSDSGSQSSRA 581


>SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)
          Length = 255

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 451 VYVCTRCIWK--SSD*KLGCDKGMLISALQPNESMALRTQA 567
           V VC  C  K  S+D  +GCD   L SAL+ ++S +  ++A
Sbjct: 103 VRVCDSCFSKRASTDEGIGCDMSELASALEDSDSGSQSSRA 143


>SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 6   RDQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 158
           RD+ Q     N LL + ND + + ED  N+   E K +    S  +A++ +
Sbjct: 272 RDKEQVISRSNELLESSNDQKKKQEDTLNHRIQEIKKLENTVSTISAEVVK 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,633,194
Number of Sequences: 59808
Number of extensions: 391715
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)