Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00405
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    51   8e-07
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U53332-9|AAO38632.1|  392|Caenorhabditis elegans Ceramide glucos...    29   3.8  
U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucos...    29   3.8  
U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucos...    29   3.8  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    29   3.8  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    29   3.8  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    29   3.8  
DQ178632-1|ABD75711.1|  392|Caenorhabditis elegans ceramide glyc...    29   3.8  
U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophil...    27   8.7  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 27/65 (41%), Positives = 34/65 (52%)
 Frame = +3

Query: 9   DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 188
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 189 RRLFS 203
           RR+ +
Sbjct: 62  RRVLA 66



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/70 (31%), Positives = 37/70 (52%)
 Frame = +2

Query: 302 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 481
           +++K+ D++SE+A N IDD G+  W   L+ M  C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 482 RQTENLDVIK 511
           R    L  +K
Sbjct: 160 RLAHFLPTLK 169


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 245  ADSVREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDP 424
            A+ + ++LL  L  D    +R   C  +S+L R H   + +   PE+L+ +         
Sbjct: 1116 ANEIAKELLPALT-DREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKE 1174

Query: 425  NIKEAGIRMFTSV 463
            +++EA  R   S+
Sbjct: 1175 SVREAADRAADSI 1187


>U53332-9|AAO38632.1|  392|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform d protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 547 LIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGTGK 398
           LI +     + CLY I + +L+ SKY  + +   ++S   V I++   GK
Sbjct: 10  LIAIVGFVFVFCLYLIHIIALSYSKYRLHHKVKEDSSLPGVSIIKPIVGK 59


>U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform a protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 547 LIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGTGK 398
           LI +     + CLY I + +L+ SKY  + +   ++S   V I++   GK
Sbjct: 77  LIAIVGFVFVFCLYLIHIIALSYSKYRLHHKVKEDSSLPGVSIIKPIVGK 126


>U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform c protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 547 LIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGTGK 398
           LI +     + CLY I + +L+ SKY  + +   ++S   V I++   GK
Sbjct: 88  LIAIVGFVFVFCLYLIHIIALSYSKYRLHHKVKEDSSLPGVSIIKPIVGK 137


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 547 LIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGTGK 398
           LI +     + CLY I + +L+ SKY  + +   ++S   V I++   GK
Sbjct: 88  LIAIVGFVFVFCLYLIHIIALSYSKYRLHHKVKEDSSLPGVSIIKPIVGK 137


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 547 LIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGTGK 398
           LI +     + CLY I + +L+ SKY  + +   ++S   V I++   GK
Sbjct: 88  LIAIVGFVFVFCLYLIHIIALSYSKYRLHHKVKEDSSLPGVSIIKPIVGK 137


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 547 LIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGTGK 398
           LI +     + CLY I + +L+ SKY  + +   ++S   V I++   GK
Sbjct: 88  LIAIVGFVFVFCLYLIHIIALSYSKYRLHHKVKEDSSLPGVSIIKPIVGK 137


>DQ178632-1|ABD75711.1|  392|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 547 LIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGTGK 398
           LI +     + CLY I + +L+ SKY  + +   ++S   V I++   GK
Sbjct: 10  LIAIVGFVFVFCLYLIHIIALSYSKYRLHHKVKEDSSLPGVSIIKPIVGK 59


>U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophila
           mutagen sensitive)related protein 81, isoform a protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 565 PEFAKPLIHLAAKQILTCLYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGT 404
           P F   + HL  K+ +     + + SL++  Y W  RK   T     W++   T
Sbjct: 222 PRFKSVIEHLVKKEDI----RVDIRSLSVGDYIWICRKIDGTEIVMDWVVERKT 271


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 423  QTSKKLVLE-CLRLYQVYLEIVRLKTWM 503
            +T  K VL+ C+R+ Q   E+ RLK W+
Sbjct: 1546 RTDLKSVLDQCIRILQAMREMARLKNWL 1573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,590,199
Number of Sequences: 27780
Number of extensions: 299112
Number of successful extensions: 834
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)