Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00405
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    59   2e-09
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    42   4e-04
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    36   0.018
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    30   1.5  
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    28   4.7  
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i...    28   6.1  
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i...    28   6.1  
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i...    28   6.1  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   8.1  
At3g27250.1 68416.m03406 expressed protein                             27   8.1  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
 Frame = +2

Query: 101 NRNKSSAPSEFNSKCRHCRRCASNG-GRAVTKII*CRIL*-----VLPEIAI*AADSVRE 262
           N  K S P   + K  H  + + +  GRA+  ++  ++L      + P +++    S++ 
Sbjct: 47  NLAKQSNPDTLSLKLAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKS 106

Query: 263 QLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAG 442
            +L  +Q + ++ + +K+CD VSELA   + ++G   WPE L F+F C ++  P ++E+ 
Sbjct: 107 SMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESA 163

Query: 443 IRMFTSVPGVFGNRQTENLDVIKAC*YLLCSQMN 544
             +   +    G   T ++  +    +L C   N
Sbjct: 164 FLILAQLSQYVGETLTPHIKELHGV-FLQCLSSN 196


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/76 (26%), Positives = 43/76 (56%)
 Frame = +2

Query: 254 VREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIK 433
           V++ L+ ++ ++ S  +RR   +VVS +A+  +      +WP+ L F+F C+ +   + +
Sbjct: 79  VKQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDLLTFLFQCSQSAQEDHR 135

Query: 434 EAGIRMFTSVPGVFGN 481
           E  + +F+S+    GN
Sbjct: 136 EVALILFSSLTETIGN 151



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 30  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 194
           LL   L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR+
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRK 62


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 33  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 179
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 9   DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVN 131
           D   FY L +T+L   N    +A  +Y N+ T+T  + L+N
Sbjct: 333 DFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMN 373


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -1

Query: 502 IQVFSLTISKYTWYRRKHSNTSFFDV 425
           + +  + +  + W+R++H+  +FFDV
Sbjct: 258 VSLIFIAVGLFLWWRQRHNQNTFFDV 283


>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 302

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 502 CDKGMLISALQPNESMALRTQAVKAVG 582
           CD  +LI+ L P + + L   AVK +G
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIG 254


>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 502 CDKGMLISALQPNESMALRTQAVKAVG 582
           CD  +LI+ L P + + L   AVK +G
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIG 254


>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 502 CDKGMLISALQPNESMALRTQAVKAVG 582
           CD  +LI+ L P + + L   AVK +G
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIG 254


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 101 NRNKSSAPSEFNSKCRHCRRCASNGG 178
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQP---RYKCKNCCRCWTHGG 59


>At3g27250.1 68416.m03406 expressed protein
          Length = 282

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 565 PEFAKPLIHLAAKQILTCLYHIQVFSLTIS-KYTWYRRKHSNTSFFDVWILRTG 407
           PE    L+   A   + C Y  Q F+  +  +YTW   K++ T   DVW +  G
Sbjct: 215 PEVVVWLVAEEATAAMHCNY--QAFTCRVRMQYTWKETKYTKTVPCDVWKMEFG 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,927
Number of Sequences: 28952
Number of extensions: 270496
Number of successful extensions: 673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)