BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00404 (589 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 295 3e-81 SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 295 4e-81 SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 295 4e-81 SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 167 8e-43 SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 159 2e-40 SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 98 7e-22 SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 53 4e-08 SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 47 2e-06 SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 45 7e-06 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 45 7e-06 SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05 SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.001 SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 34 0.018 SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.054 SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.16 SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 29 0.50 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 0.88 SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 1.5 SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.0 SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 4.7 SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 6.2 SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 8.2 >SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual Length = 460 Score = 295 bits (724), Expect = 3e-81 Identities = 138/154 (89%), Positives = 145/154 (94%) Frame = +1 Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231 MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60 Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411 DKLKAER+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120 Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513 GEFEAGISK+GQTREHALLA+TLGVKQLIV V K Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154 >SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual Length = 460 Score = 295 bits (723), Expect = 4e-81 Identities = 137/154 (88%), Positives = 145/154 (94%) Frame = +1 Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231 MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60 Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411 DKLKAER+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120 Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513 GEFEAGISK+GQTREHALLA+TLGVKQLIV V K Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154 >SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 295 bits (723), Expect = 4e-81 Identities = 137/154 (88%), Positives = 145/154 (94%) Frame = +1 Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231 MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60 Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411 DKLKAER+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120 Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513 GEFEAGISK+GQTREHALLA+TLGVKQLIV V K Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154 >SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 167 bits (407), Expect = 8e-43 Identities = 75/150 (50%), Positives = 105/150 (70%) Frame = +1 Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243 K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295 Query: 244 AERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 423 ER+ G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355 Query: 424 AGISKNGQTREHALLAFTLGVKQLIVGVTK 513 AG + GQTREHA+LA T G+ L+V + K Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINK 385 >SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 592 Score = 159 bits (387), Expect = 2e-40 Identities = 75/150 (50%), Positives = 99/150 (66%) Frame = +1 Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243 K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234 Query: 244 AERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 423 ER G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294 Query: 424 AGISKNGQTREHALLAFTLGVKQLIVGVTK 513 G +NGQTREHA L LG+ +++V V K Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNK 324 >SPBC9B6.04c |tuf1||mitochondrial translation elongation factor EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 439 Score = 98.3 bits (234), Expect = 7e-22 Identities = 60/152 (39%), Positives = 85/152 (55%) Frame = +1 Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237 ++K H+NI IGHVD GK+T T I KC ++G+ SF +DK Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93 Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417 E+ GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153 Query: 418 FEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513 QTREH LLA +GVKQ++V + K Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINK 178 >SPBC660.10 |||translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 813 Score = 52.8 bits (121), Expect = 4e-08 Identities = 36/113 (31%), Positives = 51/113 (45%) Frame = +1 Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255 N+ +I H+D+GK+T T ++Y G F + G V+D L AER Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76 Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414 GITI+ A F + +ID PGH DF + + D AV I+ G Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129 >SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 770 Score = 47.2 bits (107), Expect = 2e-06 Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 19/166 (11%) Frame = +1 Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255 NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ER+ Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110 Query: 256 VGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 378 GITI A W+ FE S Y + IID PGH DF + Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169 Query: 379 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTKW 516 D AVL++ A +G I+ + Q R + + + K +G W Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPW 215 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 45.2 bits (102), Expect = 7e-06 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Frame = +1 Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 222 MGK N+ VI HVD GKST T L+ K G I K +F + A E +G + Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72 Query: 223 WVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399 + L AE D+ + + + V +ID+PGH DF + D A+++V Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 45.2 bits (102), Expect = 7e-06 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Frame = +1 Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 222 MGK N+ VI HVD GKST T L+ K G I K +F + A E +G + Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72 Query: 223 WVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399 + L AE D+ + + + V +ID+PGH DF + D A+++V Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129 >SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 43.6 bits (98), Expect = 2e-05 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%) Frame = +1 Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255 N VI H+D GKST + ++ G I++ + F LDKL+ ER Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103 Query: 256 VGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414 GIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160 >SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual Length = 686 Score = 34.3 bits (75), Expect(2) = 0.001 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Frame = +1 Query: 199 GKGSFKYAWVLDKLKAERDVGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 372 GK + A+ + + GIT I + F+ ++T +D PGH F G + Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242 Query: 373 QADCAVLIVAAGTG 414 AD VL+VA G Sbjct: 243 IADIVVLVVAGDDG 256 Score = 22.2 bits (45), Expect(2) = 0.001 Identities = 7/13 (53%), Positives = 11/13 (84%) Frame = +1 Query: 79 IVVIGHVDSGKST 117 + ++GHVD GK+T Sbjct: 174 VTLMGHVDHGKTT 186 >SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1000 Score = 33.9 bits (74), Expect = 0.018 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Frame = +1 Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 246 N ++ HVD GK+T L+ G I + T+ + E+ +G + K A Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74 Query: 247 ERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414 I K Y + +ID+PGH DF + + + D A ++V A G Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130 >SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 32.3 bits (70), Expect = 0.054 Identities = 17/65 (26%), Positives = 30/65 (46%) Frame = +1 Query: 307 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 486 +V+ +D PGH + M+ G + D A+L++A QT EH + + Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162 Query: 487 KQLIV 501 K +I+ Sbjct: 163 KHIII 167 >SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1079 Score = 30.7 bits (66), Expect = 0.16 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%) Frame = +1 Query: 85 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERDV 258 ++GHVD+GK+ +L + +++ E Q++G F + K K Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541 Query: 259 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399 G K + + + IID PGH F GTS + A+L++ Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580 >SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharomyces pombe|chr 3|||Manual Length = 642 Score = 29.1 bits (62), Expect = 0.50 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -3 Query: 293 SNFQRAISIVIPTSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 162 S F IS+ +PT FSL+ ++ K LPI W S + S V Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 28.3 bits (60), Expect = 0.88 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = -3 Query: 260 PTSRSAFSLSNTQAYLKDPLPIS-WASFSNFSMVRLSIPPHL 138 PT+ + S + + Y+K P+P S ++S N S++ +PP + Sbjct: 558 PTNVNYSSCVDPRTYVKTPIPFSKFSSSENLSLIPSLLPPSI 599 >SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1|||Manual Length = 380 Score = 27.5 bits (58), Expect = 1.5 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 244 AERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKN 354 AE+ V I I A + + +T+ID PG DFI N Sbjct: 67 AEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 27.1 bits (57), Expect = 2.0 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Frame = +1 Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255 + +V GH+ GKS L+Y + + + S +Y L+ ER Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT-DTHYLERERV 189 Query: 256 VGI---TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399 + I + +A+ + + ID PGH DF+ + + +D VL+V Sbjct: 190 MSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240 >SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 339 Score = 25.8 bits (54), Expect = 4.7 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = +1 Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 405 VG D ++K + + + + PGH D I+++ S LI A Sbjct: 188 VGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237 >SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pombe|chr 2|||Manual Length = 662 Score = 25.4 bits (53), Expect = 6.2 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = -1 Query: 238 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 110 V +PK I I++ F P S S C+Y S D W T Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73 >SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 311 Score = 25.0 bits (52), Expect = 8.2 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -1 Query: 193 PGPPSRTSRWYVCQYHHIC 137 P PP +T + Y QY+ +C Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,363,917 Number of Sequences: 5004 Number of extensions: 47043 Number of successful extensions: 179 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 175 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 254167452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -