Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00404
(589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 275 2e-74
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 275 2e-74
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 275 2e-74
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 275 2e-74
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 162 1e-40
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 158 3e-39
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 92 2e-19
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 84 8e-17
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 56 2e-08
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 56 2e-08
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 48 5e-06
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 47 8e-06
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 46 2e-05
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 46 2e-05
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 39 0.003
At5g13650.2 68418.m01585 elongation factor family protein contai... 36 0.020
At5g13650.1 68418.m01584 elongation factor family protein contai... 36 0.020
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 35 0.046
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 35 0.046
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 33 0.11
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 33 0.11
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 33 0.14
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.19
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 33 0.19
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.3
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.3
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.3
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.7
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 4.0
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 27 7.0
At5g06810.1 68418.m00770 mitochondrial transcription termination... 27 9.3
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ... 27 9.3
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 275 bits (674), Expect = 2e-74
Identities = 130/149 (87%), Positives = 138/149 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLI 498
G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/28 (53%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEE-IRGVSSYIRR 587
NKMD+T P YS+ R++E I+ VSSY+++
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKK 180
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 275 bits (674), Expect = 2e-74
Identities = 130/149 (87%), Positives = 138/149 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLI 498
G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/28 (53%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEE-IRGVSSYIRR 587
NKMD+T P YS+ R++E I+ VSSY+++
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKK 180
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 275 bits (674), Expect = 2e-74
Identities = 130/149 (87%), Positives = 138/149 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLI 498
G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/28 (53%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEE-IRGVSSYIRR 587
NKMD+T P YS+ R++E I+ VSSY+++
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKK 180
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 275 bits (674), Expect = 2e-74
Identities = 130/149 (87%), Positives = 138/149 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLI 498
G FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMI 149
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/28 (53%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEE-IRGVSSYIRR 587
NKMD+T P YS+ R++E I+ VSSY+++
Sbjct: 153 NKMDATTPKYSKARYDEIIKEVSSYLKK 180
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 162 bits (394), Expect = 1e-40
Identities = 71/150 (47%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 247 ERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 426
ER+ GIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEA
Sbjct: 298 ERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEA 357
Query: 427 GISK-NGQTREHALLAFTLGVKQLIVGVTK 513
G GQTREHA + GV+Q+IV + K
Sbjct: 358 GFDNLKGQTREHARVLRGFGVEQVIVAINK 387
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 158 bits (383), Expect = 3e-39
Identities = 73/151 (48%), Positives = 104/151 (68%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 241 KAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 420
+ ER G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEF
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF 217
Query: 421 EAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
E G + GQTREH LA TLGV +LIV V K
Sbjct: 218 ETGYERGGQTREHVQLAKTLGVSKLIVVVNK 248
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 92.3 bits (219), Expect = 2e-19
Identities = 55/155 (35%), Positives = 80/155 (51%)
Frame = +1
Query: 49 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 229 LDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 408
+D ER GITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 409 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
G QT+EH LLA +GV ++V + K
Sbjct: 177 DGPMP-------QTKEHILLAKQVGVPDMVVFLNK 204
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 83.8 bits (198), Expect = 8e-17
Identities = 54/152 (35%), Positives = 76/152 (50%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 107
Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417
E+ GITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGP 167
Query: 418 FEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
QT+EH LLA +GV L+ + K
Sbjct: 168 MP-------QTKEHILLARQVGVPSLVCFLNK 192
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 55.6 bits (128), Expect = 2e-08
Identities = 45/151 (29%), Positives = 67/151 (44%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ER+
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 435
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 436 KNGQTREHALLAFTLGVKQLIVGVTKWIPLN 528
+ Q R + + K +G W LN
Sbjct: 177 VDRQMRRYEVPRVAFINKLDRMGADPWKVLN 207
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 55.6 bits (128), Expect = 2e-08
Identities = 45/151 (29%), Positives = 67/151 (44%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ER+
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 435
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 436 KNGQTREHALLAFTLGVKQLIVGVTKWIPLN 528
+ Q R + + K +G W LN
Sbjct: 177 VDRQMRRYEVPRVAFINKLDRMGADPWKVLN 207
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 48.0 bits (109), Expect = 5e-06
Identities = 35/113 (30%), Positives = 52/113 (46%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI ++ HVD GK+T HLI GG + GK F +D L E+
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
IT+ + + Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 47.2 bits (107), Expect = 8e-06
Identities = 34/117 (29%), Positives = 55/117 (47%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K + NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----ME 140
Query: 244 AERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
E++ GITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 46.0 bits (104), Expect = 2e-05
Identities = 42/132 (31%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Frame = +1
Query: 40 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 219
D K EK N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 220 AWVLDKLKAERDVGITIDIALWKFET-------SKYYVTIIDAPGHRDFIKNMITGTSQA 378
LDKL+ ER + + A +E S Y + +ID PGH DF + S
Sbjct: 103 ---LDKLQRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSAC 159
Query: 379 DCAVLIVAAGTG 414
A+L+V A G
Sbjct: 160 QGALLVVDAAQG 171
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 45.6 bits (103), Expect = 2e-05
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
N +I H+D GKST L+ G + R + K F LD + ER+
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 256 VGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GITI + + +E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKGSFKYAWVLDKLKA 246
N+ VI HVD GKST T L+ G I + + + A E +G + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 247 ERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
D + + ++Y + +ID+PGH DF + D A+++V
Sbjct: 81 MTDESLKSFTGAR--DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 35.9 bits (79), Expect = 0.020
Identities = 31/113 (27%), Positives = 48/113 (42%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI ++ HVD GK+T ++ + K ++ Q M + ++D ER+
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GITI V IID PGH DF + + D +L+V + G
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEG 182
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 35.9 bits (79), Expect = 0.020
Identities = 31/113 (27%), Positives = 48/113 (42%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI ++ HVD GK+T ++ + K ++ Q M + ++D ER+
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GITI V IID PGH DF + + D +L+V + G
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEG 181
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.046
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 262 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.046
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 262 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 295 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 474
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 475 TLGVKQLIV 501
+ +K +I+
Sbjct: 178 MMRLKHIII 186
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 295 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 474
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 475 TLGVKQLIV 501
+ +K +I+
Sbjct: 178 MMRLKHIII 186
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 289 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 456
FE SK +V+ +D PGH + M+ G + D A+L++AA QT E
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSE 165
Query: 457 HALLAFTLGVKQLIV 501
H + +K +I+
Sbjct: 166 HLAAVEIMQLKHIII 180
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 310 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 307 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 486
+V+ +D PGH + M+ G + D A+LI+AA QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 487 KQLIV 501
K +I+
Sbjct: 174 KDIII 178
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 310 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 235 KLKAERDVGITIDIALWKFET----SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 402
K+ A GIT I +K +D PGH F G D A+++VA
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVA 584
Query: 403 AGTG 414
A G
Sbjct: 585 ADDG 588
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/89 (22%), Positives = 39/89 (43%)
Frame = +1
Query: 298 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT 477
++Y +D PG ++ ++ G + LIVAA T F + + + F
Sbjct: 2 ARYAAGAVDCPGSPKSVRIVVVGDKGTGKSSLIVAAATDSFPPNVPPVLPDYKLPIEFFP 61
Query: 478 LGVKQLIVGVTKWIPLNHHTVSPDLRKSE 564
G+ IV T P + V+ +L++++
Sbjct: 62 DGIPVTIVD-TSSRPEDRDIVAEELKRAD 89
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 127 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDVGIT 267
H + G+D + I K KEA+E+ S++ + K+KA D+G +
Sbjct: 174 HHVLCYSGVDPKRIGKIFKEAREV--FSYETGVLASKIKAYEDLGFS 218
>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 856
Score = 27.1 bits (57), Expect = 9.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -2
Query: 492 LFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSIN 319
+FDT E L G+ F +TGT ++ IS GS D L I+VS+ N
Sbjct: 714 IFDTSFEDYMSFLCGINGSAPVVFNYTGTNCLRNNATIS--GS-DLNLPSITVSKLNN 768
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,573,835
Number of Sequences: 28952
Number of extensions: 255055
Number of successful extensions: 795
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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