Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00403
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0JF37 Cluster: Os04g0166000 protein; n=4; Oryza sativa...    36   1.3  
UniRef50_Q4N3Y9 Cluster: Putative uncharacterized protein; n=2; ...    36   1.3  

>UniRef50_Q0JF37 Cluster: Os04g0166000 protein; n=4; Oryza
           sativa|Rep: Os04g0166000 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 1014

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 367 DVYLNTHFVFILFNTMKDFLCSKTN-V*LYSNTSSLFGGKRSFCLNKMKCCLYIISFNGS 543
           ++Y + ++ F  F ++ D L  +   +  YS    L G K +      +CCLY++S N  
Sbjct: 186 NIYSHYYYHFYSFESLNDLLPREAEEITQYSGELHLDGTKAA------ECCLYLLSLNYR 239

Query: 544 GSHIFQFN 567
           G HI  +N
Sbjct: 240 GGHIMDYN 247


>UniRef50_Q4N3Y9 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 224

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 61  IYLYVCFKYNSNSLCLFRICFTYYACILETIFIYKGL 171
           +Y YV   YN ++  LF   F+Y+   L  +F YKGL
Sbjct: 42  LYEYVLDLYNDDTFALFLTLFSYFGQFLANMFFYKGL 78


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,788,438
Number of Sequences: 1657284
Number of extensions: 11806151
Number of successful extensions: 20587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20581
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)