Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00403
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    27   2.0  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   6.0  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    26   6.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   8.0  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   8.0  

>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 391 VFILFNTMKDFLCSKTNV*LYSNTSSLFG 477
           V  LFNT++ FL  K    +YSNT+ + G
Sbjct: 22  VAALFNTVQSFLTPKLTKRVYSNTNEVNG 50


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 554 FFNLTRKFYYCHTHFIMN 607
           F N   +FYYC  HFI N
Sbjct: 208 FVNDKGEFYYCKWHFITN 225


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 308 YV*GYPLCERNDAICKIMVTLKRGVFLFLFSFIDYSPAT--DYT 183
           Y  G PL   N  I +++  L RG+++ + +   Y   T  +YT
Sbjct: 153 YEDGQPLLPDNPVISRLIQLLSRGIYVIILTAAGYPSRTGQEYT 196


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 509 FILFRQKDLFPPKSEDVLLYNYTFVFEQRKSFIVLNKMKTK 387
           F+L  + DLF   S  +LLYN   + + RK+ I++  + T+
Sbjct: 682 FVL-EEFDLFVQHSRQMLLYNLFDIAQSRKAPILIIGLTTR 721


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 128 YVKQILNRHNEFELYLKQTYK*ME 57
           Y K++   HN ++LYLK++ K M+
Sbjct: 288 YNKEVAIVHNTYQLYLKKSRKIMD 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,055
Number of Sequences: 5004
Number of extensions: 56081
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)