Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00403
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0342 - 4457825-4460863                                           36   0.041
04_01_0341 - 4442727-4445597                                           31   0.67 
10_05_0114 + 9294747-9294788,9294883-9294996,9295066-9295173,929...    29   3.6  
10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373...    28   8.3  

>04_01_0342 - 4457825-4460863
          Length = 1012

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 367 DVYLNTHFVFILFNTMKDFLCSKTN-V*LYSNTSSLFGGKRSFCLNKMKCCLYIISFNGS 543
           ++Y + ++ F  F ++ D L  +   +  YS    L G K +      +CCLY++S N  
Sbjct: 184 NIYSHYYYHFYSFESLNDLLPREAEEITQYSGELHLDGTKAA------ECCLYLLSLNYR 237

Query: 544 GSHIFQFN 567
           G HI  +N
Sbjct: 238 GGHIMDYN 245


>04_01_0341 - 4442727-4445597
          Length = 956

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 361 NEDVYLNTHFVFILFNTMKDFLCSKTN-V*LYSNTSSLFGGKRSFCLNKMKCCLYIISFN 537
           N+D Y +T          KDFL  +   +  YS    L G K +      +CCLY++S N
Sbjct: 126 NDDYYYSTEI-------WKDFLPREAEEITQYSGELHLDGTKAA------ECCLYLLSLN 172

Query: 538 GSGSHIFQFN 567
             G HI  +N
Sbjct: 173 YRGGHIMDYN 182


>10_05_0114 +
           9294747-9294788,9294883-9294996,9295066-9295173,
           9295774-9296145,9296584-9296652,9296754-9296825,
           9297070-9297198,9297690-9297770,9298622-9298807,
           9299135-9299860
          Length = 632

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 242 VLASPLFCKWRRFFH 286
           ++ +P FC W+RFFH
Sbjct: 174 LICNPFFCLWKRFFH 188


>10_01_0340 -
           3734116-3734178,3734212-3734300,3734785-3734844,
           3736188-3736245,3736507-3736893,3736942-3737615,
           3739154-3739203,3739903-3739943,3740721-3740860,
           3740903-3741183,3741405-3741613
          Length = 683

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 677 LKPKMADEEVTIQTSIYKRNFLKHS**NEYGNNKTYALN*KICEPLP 537
           L+P +A+EE  IQTS +    L+     +YGN   Y    K   PLP
Sbjct: 387 LQPSVANEE--IQTSDHAAILLRDGFDEDYGNTLNYFSKKKPLVPLP 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,030
Number of Sequences: 37544
Number of extensions: 267455
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)