Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00403
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.35 
Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81477-6|CAB03930.1|  176|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    27   9.9  
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical
           protein T05C3.6a protein.
          Length = 504

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 299 GYPLCERNDAICKIMVTLKRGVFLFLFSFIDYSPATDYTKSTNR 168
           G+  C R D +  ++ T+         + +DYSP+T Y K+ N+
Sbjct: 297 GFQACGREDDLTSMIKTIDEAQEYLYMAVMDYSPSTLYLKNANK 340


>Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical
           protein Y7A9C.7 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 530 VLTVAVHIFFNLTRKFYYCHTHFIMNVLKNFVYKLKFE*LLLHRPFLV 673
           +L  AV+ F+ +TR  Y+ +  FI      F +K K +   L  PFL+
Sbjct: 57  LLFPAVNHFYQMTRNTYFIYLSFICFFCLTFTHKHKGQYFNLAFPFLL 104


>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical
           protein D2085.4 protein.
          Length = 1001

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -2

Query: 512 HFILFRQKDLFPPKSEDVLLYNYTFVFEQRKSFIVLNKMKTK*VFK*TSSL-LKTEF*IH 336
           ++IL+  KD   P S      N+T +FE  KS  +LN  K +     T+SL L++ F   
Sbjct: 233 NYILYYIKDHIKPTSP-----NFTNLFEAMKSVDILNNWKVRPEIAETASLRLQSIFVSQ 287

Query: 335 *TKLSNSQ 312
              +SN+Q
Sbjct: 288 IVHVSNTQ 295


>Z81477-6|CAB03930.1|  176|Caenorhabditis elegans Hypothetical
           protein C27C7.8 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 197 LANSL*TKIKIKIHLVLASPLFCKWRRFFHKVGSPIRI 310
           L +SL   +K+ ++   A  LFC W   FHK  + ++I
Sbjct: 80  LGSSL-ANLKLNMYEYSAFKLFCIWNLKFHKTSTALKI 116


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 197 LANSL*TKIKIKIHLVLASPLFCKWRRFFHKVGSPIRI 310
           L +SL   +K+ ++   A  LFC W   FHK  + ++I
Sbjct: 264 LGSSL-ANLKLNMYEYSAFKLFCIWNLKFHKTSTALKI 300


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 197 LANSL*TKIKIKIHLVLASPLFCKWRRFFHKVGSPIRI 310
           L +SL   +K+ ++   A  LFC W   FHK  + ++I
Sbjct: 245 LGSSL-ANLKLNMYEYSAFKLFCIWNLKFHKTSTALKI 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,819,034
Number of Sequences: 27780
Number of extensions: 297327
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)