Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00403
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 29  LKFYEINKSFPSIYTFVLNITQ 94
           +K+Y+    FP  + F+ N+++
Sbjct: 295 MKYYDYGADFPFNFAFIKNVSR 316


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 29  LKFYEINKSFPSIYTFVLNITQ 94
           +K+Y+    FP  + F+ N+++
Sbjct: 295 MKYYDYGADFPFNFAFIKNVSR 316


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 554 FFNLTRKFYYCHTHFIMNVLKNFVYKLKFE*LLLHRP 664
           FF+L R       H I+N   N    +  E +L  RP
Sbjct: 246 FFDLVRPLIAFKFHSILNRTNNIFELVTVEPILTERP 282


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 529 SFNGSGSHIFQFNA*VLLLPYSFHHECF 612
           SF+GS + + Q +  V+L   S HHE +
Sbjct: 503 SFSGSRNPLLQEHDSVMLGEISPHHEYY 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,518
Number of Sequences: 438
Number of extensions: 4215
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)