Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00402
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 166 1e-41
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 166 1e-41
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 163 1e-40
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 144 4e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 115 3e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 115 3e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 101 3e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 73 2e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 73 2e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 69 3e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 69 3e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 69 3e-12
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.005
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 36 0.033
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 35 0.044
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.077
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.18
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.18
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.24
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.24
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.54
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.54
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 31 0.72
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 31 0.72
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.72
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.72
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.95
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.7
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.2
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.2
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.2
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 28 6.7
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 8.9
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 166 bits (404), Expect = 1e-41
Identities = 83/119 (69%), Positives = 94/119 (78%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVKK 512
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +1
Query: 568 VSSYIKKIGYNPAAVAFVPISGWHGDNM 651
VS +IKKIGYNP AV FVPISG++GDNM
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFNGDNM 201
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 509 KMDSTEPPYSEPRFEEIQRE 568
KMDSTEPP+SE RF EI E
Sbjct: 154 KMDSTEPPFSEARFTEITNE 173
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 166 bits (404), Expect = 1e-41
Identities = 83/119 (69%), Positives = 94/119 (78%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVKK 512
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +1
Query: 568 VSSYIKKIGYNPAAVAFVPISGWHGDNM 651
VS +IKKIGYNP AV FVPISG++GDNM
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFNGDNM 201
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 509 KMDSTEPPYSEPRFEEIQRE 568
KMDSTEPP+SE RF EI E
Sbjct: 154 KMDSTEPPFSEARFTEITNE 173
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 163 bits (395), Expect = 1e-40
Identities = 80/114 (70%), Positives = 92/114 (80%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 497
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLV 149
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 144 bits (350), Expect = 4e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 104 bits (250), Expect = 5e-23
Identities = 51/82 (62%), Positives = 62/82 (75%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQADCAVLIVA 401
RDFIKNMITGTSQADCAVL+VA
Sbjct: 96 RDFIKNMITGTSQADCAVLVVA 117
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +1
Query: 568 VSSYIKKIGYNPAAVAFVPISGWHGDNM 651
VS +IKKIGYNP AV FVPISG++GDNM
Sbjct: 140 VSGFIKKIGYNPKAVPFVPISGFNGDNM 167
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 509 KMDSTEPPYSEPRFEEIQRE 568
KMDSTEPP+SE RF EI E
Sbjct: 120 KMDSTEPPFSEARFTEITNE 139
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAER 252
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 115 bits (277), Expect = 3e-26
Identities = 54/86 (62%), Positives = 64/86 (74%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 232 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFE 291
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
GQT+EHALL +LGV QLIV V K
Sbjct: 292 NGGQTKEHALLLRSLGVTQLIVAVNK 317
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 241 KAERD 255
+ ER+
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 115 bits (277), Expect = 3e-26
Identities = 54/86 (62%), Positives = 64/86 (74%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 250 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFE 309
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
GQT+EHALL +LGV QLIV V K
Sbjct: 310 NGGQTKEHALLLRSLGVTQLIVAVNK 335
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 241 KAERD 255
+ ER+
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 101 bits (243), Expect = 3e-22
Identities = 51/119 (42%), Positives = 73/119 (61%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ Y RE +E G + L C+ + +G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEE--REKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 336 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVKK 512
+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++ V K
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNK 256
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = +1
Query: 55 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 234
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 235 KLKAERD 255
ER+
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 72.9 bits (171), Expect = 2e-13
Identities = 40/86 (46%), Positives = 53/86 (61%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME---- 147
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
QT+EH +LA +GVK + + + K
Sbjct: 148 ---QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 72.9 bits (171), Expect = 2e-13
Identities = 40/86 (46%), Positives = 53/86 (61%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME---- 147
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
QT+EH +LA +GVK + + + K
Sbjct: 148 ---QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 96 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 151
Query: 435 KNGQTREHALLAFTLGV 485
QTREH LLA +GV
Sbjct: 152 ---QTREHLLLARQVGV 165
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 435 KNGQTREHALLAFTLGV 485
QTREH LLA +GV
Sbjct: 153 ---QTREHLLLARQVGV 166
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 435 KNGQTREHALLAFTLGV 485
QTREH LLA +GV
Sbjct: 153 ---QTREHLLLARQVGV 166
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 258 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
GIT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE---- 243
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
QT + A V QL+V V K
Sbjct: 244 ---QTAQSIKFAKDANV-QLVVAVNK 265
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 192
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.1 bits (77), Expect = 0.044
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +3
Query: 309 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 488
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 489 QLIVGVKKWIPLNHHTVSPDLRKSR 563
++I+ + K +S +K R
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVR 151
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGID 156
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
RGITI A + + IID PGH DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 517 IHFFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 383
++ F PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 11 LNLFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 264 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 264 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 222 LGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 401
L I + +G + + + I + Y + IID PGH +F M AD V++V
Sbjct: 174 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 233
Query: 402 AGTG 413
A G
Sbjct: 234 AHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 222 LGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 401
L I + +G + + + I + Y + IID PGH +F M AD V++V
Sbjct: 49 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 108
Query: 402 AGTG 413
A G
Sbjct: 109 AHEG 112
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 28 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 28 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 306 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 401
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 315 IIDAPGHRDFIKNMITGTSQADCAVLIV 398
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 398
RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 398
RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 572 PHTSRRLATTQLLSLSCPFLD 634
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 169 EKFEKEAQEMGKGSFKYAWVLDKLKAERDVVSQSILLS 282
E+ +K +EM K +Y L++L+ E V+ Q +LLS
Sbjct: 211 ERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLS 248
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 309 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 404
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = +3
Query: 279 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 458
++KFE+S + +T + K ITGT VL+V+ +F K+ Q
Sbjct: 104 VYKFESSLHRLTFGLTKSRTEDYKTKITGTLGKLQIVLVVSEAFWKFLNKRYKSAQIFFA 163
Query: 459 ALLAFTLGVKQLIVGVKKWIPLNHHTVSPDLRKS 560
F L + + I + W L+ H+ + RKS
Sbjct: 164 FFPNFQLKILECIWHI--WATLDRHSATAVYRKS 195
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -3
Query: 494 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 336
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 335 VSRSINDGNI 306
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,743,672
Number of Sequences: 27780
Number of extensions: 335892
Number of successful extensions: 1062
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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