Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00395
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   1.5  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   1.5  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   1.5  
AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical p...    27   8.2  

>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 IAPTPDNFGSNSKDKLYANWRDLTRCRPINSSCLMK 249
           +A + D++G N + +   +W   + C P   SC+ K
Sbjct: 414 LACSKDSYGPNCEKQAMCDWNHASECNPETGSCVCK 449


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 IAPTPDNFGSNSKDKLYANWRDLTRCRPINSSCLMK 249
           +A + D++G N + +   +W   + C P   SC+ K
Sbjct: 414 LACSKDSYGPNCEKQAMCDWNHASECNPETGSCVCK 449


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 IAPTPDNFGSNSKDKLYANWRDLTRCRPINSSCLMK 249
           +A + D++G N + +   +W   + C P   SC+ K
Sbjct: 414 LACSKDSYGPNCEKQAMCDWNHASECNPETGSCVCK 449


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 IAPTPDNFGSNSKDKLYANWRDLTRCRPINSSCLMK 249
           +A + D++G N + +   +W   + C P   SC+ K
Sbjct: 414 LACSKDSYGPNCEKQAMCDWNHASECNPETGSCVCK 449


>AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical
           protein Y34B4A.10 protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 433 WETEEEVTFSTSKPLLGTMPSAFTKTP 513
           W  +E V  +TSKP LG   S FT+ P
Sbjct: 333 WNEDEAVVVTTSKPSLGYAISQFTQLP 359


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
            T16G12.5 protein.
          Length = 1142

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 522  SFGRCLSECRGHGSEKWLGR 463
            +FG  +   RG GSEKWLG+
Sbjct: 1028 AFGNLMIATRGRGSEKWLGQ 1047


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 615  RSCVPIWLMMFHPRFWVSHSSKRSAQRLI**SFGRCLSE--CRGHGSEKW 472
            RS VP+ L M   + +V    + S QR+   +FGR  S+    GH  E+W
Sbjct: 1109 RSGVPVALPMDLRQNFVRFCVRNSVQRMKRFNFGRVYSQTSANGHPHERW 1158


>Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical
           protein K07A1.10 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 163 FGSNSKDKLYANWRDLTRCRPINSSCLMKKKVDIYY 270
           F   S+ K+  NWR L R    NSS  +  KVD+ +
Sbjct: 9   FSRLSRKKMLRNWRLLVRSFATNSSEEIAPKVDVSF 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,275
Number of Sequences: 27780
Number of extensions: 250398
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)