Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00393
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.14 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    24   0.74 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   1.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   1.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 500 PPPSLGPAP*EQACAPPLRISCPTPRR*ASPVTV-EPPRWQRDHPPCWCGS 351
           P  +  PAP E+  A P     PTP   +SP ++ E P   RD P   C S
Sbjct: 39  PNSAASPAPPEEEAASPTPGDVPTP---SSPRSISEDPLNCRDLPNSRCNS 86


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 434 PTPRR*ASPVTVEPPRWQRDHPPCWCGSP 348
           P+PRR A PV V      RD  PC  G P
Sbjct: 114 PSPRRVAVPVLV------RDGKPCLSGGP 136


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 311 QAADESERIRKALENRTNMEDDRVAILEAQLSQA 412
           QA   +  +++A+  + +  D+R+A ++AQL  A
Sbjct: 54  QAPKLNAEVKRAITQQHSERDERLAHVQAQLGAA 87


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 392 PRWQRDHPPCWCGSPAPCVFARIHRR 315
           PR ++ HPP W      C+  R  RR
Sbjct: 46  PRQKKSHPPQWTWQ---CINQRCERR 68


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -3

Query: 503 VPPPSLGPAP*EQACAPPLRISCPTPRR*ASPVTVEPPRWQRDHPP 366
           +P PS   A    + A P  +  P     A  V + PP      PP
Sbjct: 701 LPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -3

Query: 503 VPPPSLGPAP*EQACAPPLRISCPTPRR*ASPVTVEPPRWQRDHPP 366
           +P PS   A    + A P  +  P     A  V + PP      PP
Sbjct: 593 LPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPP 638


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 473  MEQDLEKAEERANKAIAKSL 532
            +E++ ++AEE   KA  KSL
Sbjct: 1073 LEEEKKQAEEAKRKAKQKSL 1092


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 473  MEQDLEKAEERANKAIAKSL 532
            +E++ ++AEE   KA  KSL
Sbjct: 1073 LEEEKKQAEEAKRKAKQKSL 1092


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 473  MEQDLEKAEERANKAIAKSL 532
            +E++ ++AEE   KA  KSL
Sbjct: 1073 LEEEKKQAEEAKRKAKQKSL 1092


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 473  MEQDLEKAEERANKAIAKSL 532
            +E++ ++AEE   KA  KSL
Sbjct: 1073 LEEEKKQAEEAKRKAKQKSL 1092


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,127
Number of Sequences: 336
Number of extensions: 2167
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)