Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00393
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 34 0.012
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.027
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 31 0.11
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 31 0.14
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 31 0.14
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 29 0.58
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.58
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.58
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 28 1.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 1.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 1.8
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 2.3
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 3.1
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 26 4.1
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 5.4
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 5.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 7.2
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 7.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 9.5
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 9.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 9.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.5
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 25 9.5
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 34.3 bits (75), Expect = 0.012
Identities = 36/119 (30%), Positives = 50/119 (42%)
Frame = +2
Query: 158 VPQTVASGNYAKRRS*VRSGCPEPTYPTAGGGLERSEERLATATAKLSEASQAADESERI 337
VPQ AS + S S PT E + +R + + Q E+E
Sbjct: 490 VPQKNAS---SPNPSETNSRAETPTAAPPQISEEEASQRKDAIKLAIQQRIQEKAEAEAK 546
Query: 338 RKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLEKAEERANK 514
RKA E + +E + A EA+ QAK AEE K+ E K E+ +AEE A +
Sbjct: 547 RKA-EEKARLEAEENAKREAE-EQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 603
Score = 33.5 bits (73), Expect = 0.020
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKLIAEES 433
E +R A A+L A E+E + ++ E + E + A EA+ +AK AEE+
Sbjct: 542 EAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAE-EKAKREAEEN 600
Query: 434 DKKYEEVARKLVLMEQDLEKAEERANK 514
K+ E K E+ +AEE+A +
Sbjct: 601 AKREAEEKAKREAEEKAKREAEEKAKR 627
Score = 32.7 bits (71), Expect = 0.036
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKLIAEES 433
E + +R A AK +A E+E + ++ E + E + A EA+ +AK AEE
Sbjct: 558 EENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAE-EKAKREAEEK 616
Query: 434 DKKYEEVARKLVLMEQDLEKAEERANK 514
K+ E K E+ +AEE+A +
Sbjct: 617 AKREAEEKAKREAEEKAKREAEEKAKR 643
Score = 32.7 bits (71), Expect = 0.036
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKLIAEES 433
E +R A AK +A E+E + ++ E + E + A EA+ +AK AEE
Sbjct: 590 EEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAE-EKAKREAEEK 648
Query: 434 DKKYEEVARKLVLMEQDLEKAEERANK 514
K+ E K E +AEE+A +
Sbjct: 649 AKREAEEKAKREAEENAKREAEEKAKR 675
Score = 31.9 bits (69), Expect = 0.062
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKLIAEES 433
E +R A AK +A E+E + ++ E E + A EA+ +AK AEE
Sbjct: 566 EEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAE-EKAKREAEEK 624
Query: 434 DKKYEEVARKLVLMEQDLEKAEERANK 514
K+ E K E+ +AEE+A +
Sbjct: 625 AKREAEEKAKREAEEKAKREAEEKAKR 651
Score = 31.9 bits (69), Expect = 0.062
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESER-IRKALENRTNMEDDRVAILEAQLSQAKLIAEES 433
E +R A AK +A E+E ++ E + E + A EA+ +AK AEE
Sbjct: 574 EEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAE-EKAKREAEEK 632
Query: 434 DKKYEEVARKLVLMEQDLEKAEERANK 514
K+ E K E+ +AEE+A +
Sbjct: 633 AKREAEEKAKREAEEKAKREAEEKAKR 659
Score = 31.5 bits (68), Expect = 0.083
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKLIAEES 433
E +R A AK +A E+E + ++ E + E + A EA+ +AK AEE+
Sbjct: 622 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAE-EKAKREAEEN 680
Query: 434 DKKYEEVARKLVLMEQDLEKAEERANKAIAKS 529
K+ E K E KAEE + K+
Sbjct: 681 AKREAEEKVKRETEENAKRKAEEEGKREADKN 712
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.027
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 503 VPPPSLGPAP*EQACAPPLRISCPTPRR*ASPVTVEP 393
+PPPS AP + APP+ S P P + A+PV P
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 506 RVPPPSLGPAP*EQACAPPLRISCPTPRR*ASPVTVEPPRWQRDHP--PCWCGSPAPCVF 333
+VPPP L AP + P + P A VT E P++ P P P P
Sbjct: 200 KVPPPPLSQAPVANTSSRPSSFAPPAGH--APNVTSESPKFPNRGPSIPSASVPPVPPSS 257
Query: 332 ARIHRRP 312
+ +RP
Sbjct: 258 YVLQQRP 264
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 500 PPPSLGPAP*EQACAPPL 447
PPP PAP A APPL
Sbjct: 6 PPPPPAPAPAAAAPAPPL 23
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -3
Query: 464 ACAPPLRISCPTPRR*ASPVTVEPPRWQRDHPPCWCGSPAP 342
+ APP + PTP+ P T PPR P P P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 31.1 bits (67), Expect = 0.11
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +2
Query: 62 DKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPT 241
D H++R R++E+E NGK R G P + SGN A S P YPT
Sbjct: 3 DSHSSR---RKYEKEKLVFATNNGK---RTEGTPAFLKSGNTASSSSPTLQFRPTSRYPT 56
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 30.7 bits (66), Expect = 0.14
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESERIRKALENRTNME------DDRVAILEAQLSQAKL 418
+RS E L A L E ++ E ERI E +TN + D+ + QA+L
Sbjct: 39 KRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKILQKSNDETAQAMRKMQDQARL 98
Query: 419 --IAEESDKKYEEV-ARKLVLMEQDLEK---AEERANK 514
+ + +K E+ RK +L E + +K A ER NK
Sbjct: 99 RDLQKIRQQKAEDAEQRKKILAEIERDKKRRAAERENK 136
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 30.7 bits (66), Expect = 0.14
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 266 EERLATATAKLSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKLIAEES 433
EE + T LSE AA R + LEN T +E ++ A L+ SQ K A+ES
Sbjct: 171 EENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKES 230
Query: 434 DKK 442
K
Sbjct: 231 KPK 233
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 28.7 bits (61), Expect = 0.58
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 RSEERLATATAKLSEASQAADESERIRKALENRTNMEDD------RVAILEAQLSQAKLI 421
+S+ + T LSE + E + +EN E +V ILE++L L
Sbjct: 825 KSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLH 884
Query: 422 A-EESDKKYEEVARKLVLMEQ--DLEKAEERA 508
E ++KY E RKL L+E+ DL+K +A
Sbjct: 885 NFSELEEKYAEYLRKLALLEEVKDLKKKLSKA 916
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.58
Identities = 21/78 (26%), Positives = 41/78 (52%)
Frame = +2
Query: 209 RSGCPEPTYPTAGGGLERSEERLATATAKLSEASQAADESERIRKALENRTNMEDDRVAI 388
RS P+P ++R++ERL +KL++ + A+ S+ + ++E R A+
Sbjct: 420 RSHPPQPANLDYSSAIQRAQERLTLEESKLTDL-RTAEPSQYV-------NDVEVARRAL 471
Query: 389 LEAQLSQAKLIAEESDKK 442
+AQ Q+K+ +E + K
Sbjct: 472 RDAQAEQSKVESEYNSVK 489
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 28.7 bits (61), Expect = 0.58
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 470 EQACAPPLRISCPTPRR*ASPVTVEPPRWQRDH 372
++A APP+ I CP R+ TV R+QRDH
Sbjct: 1341 QRASAPPIDIYCPGSRQ----FTVLQSRFQRDH 1369
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 287 TAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQ--LSQAKLIAEESDKKYEEVAR 460
TA L E D E ++ L+N++ + AIL + L + K I ++ ++ + +
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTI-Q 319
Query: 461 KLVLMEQDLEKAEERANKAIAKS 529
K ++Q+ +EE A K++ ++
Sbjct: 320 KENTVQQEASSSEEEAVKSLPET 342
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/87 (19%), Positives = 41/87 (47%)
Frame = +2
Query: 257 ERSEERLATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESD 436
++ ++ + AK++E Q ++ + T E V++ E ++ +L +
Sbjct: 1402 QQLSQKTSELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTKEEL--SSTQ 1459
Query: 437 KKYEEVARKLVLMEQDLEKAEERANKA 517
+K E+ L +++LEK + +NK+
Sbjct: 1460 RKLSEIMDILNTTKEELEKVRQNSNKS 1486
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 263 SEERLATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKK 442
++ER+ T L E A E + + + +R + +R++ LE Q++ A D+K
Sbjct: 865 TKERVLQLTNDLQEEQALAHEKDILVERANSRVEVVHERLSSLENQVTIA-------DEK 917
Query: 443 YEEVARKLVLMEQDL 487
YE + + +E+DL
Sbjct: 918 YEFLYAEKQSIEEDL 932
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/87 (19%), Positives = 42/87 (48%)
Frame = +2
Query: 266 EERLATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKLIAEESDKKY 445
EE+ L + +Q E + ++ L+ N E+D + +E+ S + ++++
Sbjct: 517 EEKQKAMAPALEKINQLTSEKQILQVELDMLLNKENDLINDVESSQSSLDKLRNDAEENR 576
Query: 446 EEVARKLVLMEQDLEKAEERANKAIAK 526
++ KL ++ DL+ ++ +K I +
Sbjct: 577 NILSSKLKVL-SDLKGEKKDVSKNIER 602
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 174 ATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 61
A+V GTP RP F FP S K+ A +S
Sbjct: 771 ASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 338 VFARIHRRPGWPRTAWRWRSRDAPRTSRV--LLQQLDTSVQ 222
V ++I G+P AW +D TS + LL+ L+T+ Q
Sbjct: 430 VVSQISASDGYPYVAWVEHCKDKSATSHIETLLESLETNSQ 470
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 323 HRRPGWPRTAWRWRSRDAPRTSRVLLQ-QLDTS 228
HR P W + D PRT RVLL+ ++D S
Sbjct: 260 HRVPVWLSSITHMLFLDDPRTQRVLLEPRIDNS 292
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 422 AEESDKKYEEVARKLVLMEQDLEKAEERANKAIAKSLS 535
+EE DKK EEV +K E++ EK EE+ + +L+
Sbjct: 678 SEEEDKK-EEVEKKDGDKERNEEKKEEKETLPVLNALT 714
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 254 LERSEERLATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQL-SQAK 415
LER ERL + T + R+ +A+ RT ED + A+++ + +QAK
Sbjct: 15 LERWSERLKSQTISHLPTDYSRPVPSRLVEAVFERTLPEDAKTALIKVYVAAQAK 69
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 192 REEAESEVAALNRRIQLLEED 254
RE ESEVA ++LL+ED
Sbjct: 861 REALESEVATAEAELELLKED 881
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 443 YEEVARKLVLMEQDLEKAEERANKAIAKSLS 535
YEE+ LV E DLE+A + + K+ S
Sbjct: 32 YEEIYNSLVHHEPDLEEAAHASYSWVVKNFS 62
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 260 RSEERLATATAKLSEASQAADESERIRKALENRTNMEDDR 379
RSEE L A S+A ERI+K +EN + + D +
Sbjct: 845 RSEEFLRNAA---SQAEIVGANKERIQKTVENGSQLLDSK 881
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 413 SPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPG 309
SP + PP + + HPP + AP + R+ PG
Sbjct: 146 SPTSPHPPSFVQPHPPYGIFA-APILDVRVLTNPG 179
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 368 EDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLEK-AEERANKAIA 523
ED+ L Q ++ EESD EE+ + + M D E+ A+E N+++A
Sbjct: 723 EDEVWKALVDSKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMA 775
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 256 ESSSSSWIRRFRAATSDSASSLRIISTCNRLW 161
E+ + +++F +T+D +SS ST + LW
Sbjct: 11 EAEHPALVKKFDKSTTDESSSKEDYSTMSDLW 42
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 365 MEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVL 472
++ DRV+ ++ LS L+AEE + E RKL L
Sbjct: 114 LQKDRVSNVDDHLSSNPLMAEEYAPEIFEYIRKLDL 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,293
Number of Sequences: 5004
Number of extensions: 33602
Number of successful extensions: 181
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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