Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00393
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    29   0.040
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.37 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.37 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.37 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.86 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.0  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 0.040
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 341 KALENRTNMEDDRVAILEAQLS---QAKLIAEESDKKYEEVARKLVL 472
           K L N  N  D R    E +L    +A L+ +E +++YE++ RK++L
Sbjct: 16  KQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRKMIL 62


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 EPTYPTAGGGLERSEERL--ATATAKLSEASQAADESERIRKALENR 358
           EPT  T GGG   S  R   + A A  +   Q  +E +RI  + E R
Sbjct: 278 EPTEVTIGGGGTTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERR 324


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 EPTYPTAGGGLERSEERL--ATATAKLSEASQAADESERIRKALENR 358
           EPT  T GGG   S  R   + A A  +   Q  +E +RI  + E R
Sbjct: 278 EPTEVTIGGGGTTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERR 324


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 EPTYPTAGGGLERSEERL--ATATAKLSEASQAADESERIRKALENR 358
           EPT  T GGG   S  R   + A A  +   Q  +E +RI  + E R
Sbjct: 278 EPTEVTIGGGGTTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERR 324


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 159 YHKRLQVEIMRRE 197
           YHK LQ+E++R E
Sbjct: 156 YHKELQIELVREE 168


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 218 CPEPTYPTAGGGLERSEERL 277
           CP P   T   G + +EERL
Sbjct: 618 CPSPPVTTKRDGTQETEERL 637


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = +2

Query: 350 ENRTNMEDDRVAILEAQLSQAKLIAEESDKKYEEVARKLVLMEQDLEKAEE 502
           + RT    DRV  LEA+      + ++  +  + +   L ++++ +++  +
Sbjct: 338 DRRTRHLSDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQ 388


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 258 SSPPPAVGYVGSGQP 214
           SS PPA G   +GQP
Sbjct: 526 SSSPPAKGAAAAGQP 540


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 82  VPCCMFVVI 56
           +PCCM V++
Sbjct: 250 IPCCMLVIV 258


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 82  VPCCMFVVI 56
           +PCCM V++
Sbjct: 250 IPCCMLVIV 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,618
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)