Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00392
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    57   2e-09
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    27   3.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    26   6.0  
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    25   7.9  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +1

Query: 547 IIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCHWGSRFRYT 690
           I+PI++G+LT          L+ Y+ D  N  VISSDFCHWG RF YT
Sbjct: 153 IVPIMIGALTSTTMMAAAKFLSQYIKDESNSFVISSDFCHWGRRFGYT 200



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
 Frame = +3

Query: 258 GACSAYAYRQVSPVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELRP 437
           G  ++  ++Q+    ++R+F+ GPSHH+    C +S      TPL DL +D+ +  +L  
Sbjct: 53  GKVASQGFQQLDFSKIQRVFVFGPSHHIFTRKCLVSRASICSTPLGDLKVDEDLCQKLVA 112

Query: 438 HVNS-------IEWTSRPMKMSIPLKCTYLTSQ 515
             NS       ++ +   ++M  PL   +L  Q
Sbjct: 113 SDNSFDSMTLDVDESEHSLEMQFPLLAFHLLKQ 145



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +1

Query: 115 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHAGYSYA 258
           R+A HAG WY ++   L++QL  ++       G  R +I+PHAGY Y+
Sbjct: 6   REATHAGSWYLDDTELLTKQLKSFIKNPTPETG-KRFVISPHAGYMYS 52


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +3

Query: 339 VRIAGCALSSL-DKYQTPLYDLTIDKQIYAELRPHVNSI---EWTSRPMKMSIPLKCTYL 506
           +R+   + SSL D      +D TI  +IY  +R  +NSI   E   R + +    +    
Sbjct: 660 LRLMSVSKSSLYDDLDPSSHDTTITSKIYKIIRDMLNSIPDVEGNERSLTLRAIRERVLA 719

Query: 507 TSQSHGGVQNQFHDYTDFSRLSDSREGSQV 596
              +   + N   +YTD   L  +  G  +
Sbjct: 720 KGFTEDHLINTIQEYTDLGVLLTTNNGQTI 749


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 434 ATRQFDRMDEQTDENEHSIEMHLPY*PKSWR 526
           AT  +D  DE+ D+   S+E HL    KS R
Sbjct: 78  ATAPYDHEDEEADKIYQSVEEHLSKRRKSQR 108


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 574 TPEKEAKYGAILAPYLADPQN 636
           TP KE   G I  P LADP +
Sbjct: 86  TPRKEGGLGGINIPLLADPSH 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,479
Number of Sequences: 5004
Number of extensions: 59891
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)