Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00392
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 110 1e-24
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 59 3e-09
02_05_0229 + 27027513-27027735,27027840-27027978,27028076-270282... 34 0.095
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 30 1.5
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 29 3.6
09_04_0460 - 17779111-17780184 29 3.6
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 29 3.6
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468... 28 6.2
11_04_0228 + 15105752-15105921,15106774-15106919,15107369-151074... 28 8.3
07_01_0972 - 8176013-8176960 28 8.3
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 28 8.3
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 110 bits (264), Expect = 1e-24
Identities = 78/202 (38%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Frame = +1
Query: 115 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGP-ARAIIAPHAGYSYA---ALARRTHI 282
R+A HAG WYT N +L +LD WL A LT P RA+IAPHAGYSY+ A +I
Sbjct: 5 RRASHAGSWYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYAFGNI 64
Query: 283 DK---SVLWLLNESSYWAHHTT*GSQDALFRPST-STRLPST-ISPSINKYTRS*GHTSI 447
D S ++LL S H+ T + AL R + ST + + + + + G
Sbjct: 65 DPTNISRVFLLGPSH---HYYT--PKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDF 119
Query: 448 R*NGRADR*K*AFH*NAPTLLAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLAD 627
+ D + + + P L+KV + + ++PILVG+L + EA YG +L+ YL D
Sbjct: 120 M-DLSVDEAEHSMEMHLP-YLSKVFQGHNVK--VVPILVGALNSQNEAMYGQLLSKYLDD 175
Query: 628 PQNLLVISSDFCHWGSRFRYTW 693
P+N ISSDFCHWG+RF YT+
Sbjct: 176 PKNFFSISSDFCHWGTRFSYTY 197
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +3
Query: 258 GACSAYAYRQVSPVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAEL 431
G C+AYA+ + P + R+F+LGPSHH CAL+ Y TP+ DL +D ++ EL
Sbjct: 54 GRCAAYAFGNIDPTNISRVFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEEL 111
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2
Query: 419 IRGAEATRQFDRMDEQTDENEHSIEMHLPY 508
I AT +FD MD DE EHS+EMHLPY
Sbjct: 108 IEELNATGKFDFMDLSVDEAEHSMEMHLPY 137
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 59.3 bits (137), Expect = 3e-09
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +1
Query: 580 EKEAKYGAILAPYLADPQNLLVISSDFCHWGSRFRYTW 693
+ EA YG +L+ YL DP+N ISSDFCHWG+RF YT+
Sbjct: 93 QNEAMYGQLLSRYLDDPKNFFSISSDFCHWGTRFSYTY 130
Score = 58.8 bits (136), Expect = 4e-09
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +3
Query: 258 GACSAYAYRQVSPVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQ 416
G C+AYA+ + P + R+F+LGPSHH CAL+ Y TP+ DL +D +
Sbjct: 39 GRCAAYAFGNIDPTNISRVFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHE 91
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 160 ELSRQLDLWLSKADLTHGP-ARAIIAPHAGYSYA 258
+L +LD WL A LT P A+IAPHAGYSY+
Sbjct: 5 KLDEELDGWLRAAGLTKSPDVSAVIAPHAGYSYS 38
>02_05_0229 +
27027513-27027735,27027840-27027978,27028076-27028211,
27028343-27028510
Length = 221
Score = 34.3 bits (75), Expect = 0.095
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 532 KTSFTIIPILVGSLTPEKEAKY-GAILAPYLADPQNLLVISSDFCHWGSRFRYT 690
+T ++I+ +L+ S K A + G +PYL + L++++SDF HW F T
Sbjct: 2 ETKYSILELLLVSAEGLKHAHHLGLYSSPYLVS-ETLMLMTSDFAHWHGMFAGT 54
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 473 HRSARPFYRIDVWPQLRVYLFIDGEIVEGSLVLVEGRKSASCDPHVV*WAQYED 312
H + P R+ VW V+L + I+ L V+G K ++ P Q +D
Sbjct: 38 HHCSHPALRLFVWGASTVFLLLSTSIISNLLKGVQGDKCSNASPQASGGVQQKD 91
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 416 LFIDGEIVEGSLVLVEGRKSASCDPHVV 333
L ++G + EG L L+E R A C PHVV
Sbjct: 437 LCLEGRVEEG-LKLIEARWGAGCIPHVV 463
>09_04_0460 - 17779111-17780184
Length = 357
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +3
Query: 429 LRPHVNSIEWTSRPMKMSIPLKCTYLTSQSHGGVQNQFHDYTDFSRLSDSREGSQVRSDT 608
LR HVN S P+ + L T ++ GG Q + H D LS+SR SDT
Sbjct: 189 LRAHVNCPLCRS-PVVVPSDLPATATEGEAEGGGQAEEHQVFDEISLSESRADVSEDSDT 247
Query: 609 GA 614
+
Sbjct: 248 SS 249
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 229 IAPHAGYSYAALARRTH 279
I PH+G +YA L RRTH
Sbjct: 66 IRPHSGSNYAVLTRRTH 82
>07_01_0627 +
4685077-4685155,4685978-4686336,4686761-4686862,
4687528-4687598,4687871-4687989,4688327-4688422,
4688527-4688636,4688734-4688814,4689124-4689224,
4689663-4689771,4689971-4690076,4690140-4690225,
4690324-4690449,4690816-4690902
Length = 543
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +2
Query: 317 HIGPITPREDRRMRSFVPRQVPDSPLRSHHR*TNIRGAEATRQFDRMDEQTDENEHSIEM 496
H+GP+ E + R P+Q + + R +I+G + + R + +TD+ + S M
Sbjct: 13 HLGPLAAGETLQARGMYPKQY-GAANHAFSRFYSIQGQQRSLYGFRTNVETDDTQQSARM 71
Query: 497 HLPY*PKSWRS 529
+ +S+ S
Sbjct: 72 NFEVQKRSFSS 82
>11_04_0228 +
15105752-15105921,15106774-15106919,15107369-15107448,
15107598-15107720,15107814-15107906
Length = 203
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -2
Query: 515 LASKVGAFQWNA-HFHRSARPF--YRIDVWPQLRVYLFIDGEIVEGSLVLVEGRKSASCD 345
LA ++G FQ+ A ++ P YR + W ++ +F+D + G S S D
Sbjct: 101 LAHEIGPFQFAAKRYYSGGLPIIIYRPETWTKVSNIIFVDSPVGAGFSYAATEEGSKSSD 160
Query: 344 PHVV 333
+ V
Sbjct: 161 TNAV 164
>07_01_0972 - 8176013-8176960
Length = 315
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 445 LTCGLSSAYICLSMVRS*RGVWYLSRDERAHPAILT 338
L CG S I + +R+ G W +R ERAHP +T
Sbjct: 121 LACGSSDGTISVMTMRA-DGGWDTARIERAHPVGVT 155
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -2
Query: 692 HVYLNLLPQWQKSDEITSRF*GSARYGASI--APYLASFSGVREPTKIGIIVKLVLYSSM 519
H ++L+P Q DE+ S + S + A++ A +L + KI + + +L +M
Sbjct: 135 HAKVSLIPNHQAEDELISGYSSSGKPSATLRRAHWLKQLLEASKAAKISLFLLTILAIAM 194
Query: 518 TLASKV 501
++ V
Sbjct: 195 VISDAV 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,486,498
Number of Sequences: 37544
Number of extensions: 415471
Number of successful extensions: 1112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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