Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00392
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2913| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_44490| Best HMM Match : TP2 (HMM E-Value=5.4)                       29   4.8  
SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)                     29   4.8  
SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)              29   4.8  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        28   8.4  

>SB_2913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +2

Query: 446 FDRMDEQTDENEHSIEMHLPY*PKS 520
           FD M  +TDE+EHSIE+HLPY  K+
Sbjct: 11  FDEMSSKTDEDEHSIELHLPYIAKA 35


>SB_44490| Best HMM Match : TP2 (HMM E-Value=5.4)
          Length = 174

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 318 ILGPSHHVRIAGCA-LSSLDKYQTPLYDL 401
           I G   H R  GC  L++L+KYQ P Y L
Sbjct: 59  IKGTRTHTRTPGCEILATLNKYQLPTYKL 87


>SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)
          Length = 715

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 318 ILGPSHHVRIAGCA-LSSLDKYQTPLYDL 401
           I G   H R  GC  L++L+KYQ P Y L
Sbjct: 600 IKGTRTHTRTPGCEILATLNKYQLPTYKL 628


>SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)
          Length = 657

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 247 YSYAALARRTHIDKSVLWLLNESSYWAHHTT*GSQDALFRPSTSTRLPST 396
           Y ++      HI  +VLW    S++    +T   QD+  R  T   LP++
Sbjct: 414 YRFSKKIHTKHISSAVLWFYKNSTHQMEESTLVFQDSATRKHTRGPLPTS 463


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 325 PNMKIRLTT--TGLTCLYAYAEQAPHRNTRREVLLSLWPARG 206
           P+ K  L++  TG +C YA+   APH N   E   S +  RG
Sbjct: 530 PDSKCSLSSEATGNSCSYAFNASAPHMNVTVEPDASQFVLRG 571


>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 368 PRQVPDSPLRSHHR*-TNIRGAEATRQFDRMDEQTDENEHSIE 493
           P++V DSP R         R  EAT + DR  E TDE + S E
Sbjct: 165 PQEVTDSPDRLQEEDDAPDRPQEATDESDRSQEATDEPDRSHE 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,613,357
Number of Sequences: 59808
Number of extensions: 487234
Number of successful extensions: 2826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2826
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)