Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00392
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64857-9|AAC25863.3| 302|Caenorhabditis elegans Hypothetical pr... 115 4e-26
U64857-8|AAM29667.1| 350|Caenorhabditis elegans Hypothetical pr... 115 4e-26
AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical ... 29 2.4
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 29 3.2
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81089-5|CAD89731.2| 933|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 7.4
>U64857-9|AAC25863.3| 302|Caenorhabditis elegans Hypothetical
protein C37C3.8a protein.
Length = 302
Score = 115 bits (276), Expect = 4e-26
Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 6/198 (3%)
Frame = +1
Query: 115 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHAGYSY----AALARRTHI 282
R A HAG WY N +L RQL WL A G ARA+I+PHAGYSY AA A + +
Sbjct: 11 RSASHAGSWYNANQRDLDRQLTKWLDNAGPRIGTARALISPHAGYSYCGETAAYAFKQVV 70
Query: 283 DKSV--LWLLNESSYWAHHTT*GSQDALFRPSTSTRLPSTISPSINKYTRS*GHTSIR*N 456
+V +++L S A + + + +R + + IN+ R+ H + +
Sbjct: 71 SSAVERVFILGPSHVVALNGCAITTCSKYRTPLGDLI---VDHKINEELRATRHFDLM-D 126
Query: 457 GRADR*K*AFH*NAPTLLAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQN 636
R + + + P +AKVM + +TI+P+LVGSL ++ YG I A Y+ DP+N
Sbjct: 127 RRDEESEHSIEMQLP-FIAKVMGSKR--YTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRN 183
Query: 637 LLVISSDFCHWGSRFRYT 690
L VISSDFCHWG RF ++
Sbjct: 184 LFVISSDFCHWGERFSFS 201
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 CGACSAYAYRQVSPVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELR 434
CG +AYA++QV V+R+FILGPSH V + GCA+++ KY+TPL DL +D +I ELR
Sbjct: 58 CGETAAYAFKQVVSSAVERVFILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELR 117
Query: 435 P--HVNSIEWTSRPMKMSIPLKCTYL 506
H + ++ + SI ++ ++
Sbjct: 118 ATRHFDLMDRRDEESEHSIEMQLPFI 143
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 434 ATRQFDRMDEQTDENEHSIEMHLPY 508
ATR FD MD + +E+EHSIEM LP+
Sbjct: 118 ATRHFDLMDRRDEESEHSIEMQLPF 142
>U64857-8|AAM29667.1| 350|Caenorhabditis elegans Hypothetical
protein C37C3.8b protein.
Length = 350
Score = 115 bits (276), Expect = 4e-26
Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 6/198 (3%)
Frame = +1
Query: 115 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHAGYSY----AALARRTHI 282
R A HAG WY N +L RQL WL A G ARA+I+PHAGYSY AA A + +
Sbjct: 59 RSASHAGSWYNANQRDLDRQLTKWLDNAGPRIGTARALISPHAGYSYCGETAAYAFKQVV 118
Query: 283 DKSV--LWLLNESSYWAHHTT*GSQDALFRPSTSTRLPSTISPSINKYTRS*GHTSIR*N 456
+V +++L S A + + + +R + + IN+ R+ H + +
Sbjct: 119 SSAVERVFILGPSHVVALNGCAITTCSKYRTPLGDLI---VDHKINEELRATRHFDLM-D 174
Query: 457 GRADR*K*AFH*NAPTLLAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQN 636
R + + + P +AKVM + +TI+P+LVGSL ++ YG I A Y+ DP+N
Sbjct: 175 RRDEESEHSIEMQLP-FIAKVMGSKR--YTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRN 231
Query: 637 LLVISSDFCHWGSRFRYT 690
L VISSDFCHWG RF ++
Sbjct: 232 LFVISSDFCHWGERFSFS 249
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 CGACSAYAYRQVSPVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELR 434
CG +AYA++QV V+R+FILGPSH V + GCA+++ KY+TPL DL +D +I ELR
Sbjct: 106 CGETAAYAFKQVVSSAVERVFILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELR 165
Query: 435 P--HVNSIEWTSRPMKMSIPLKCTYL 506
H + ++ + SI ++ ++
Sbjct: 166 ATRHFDLMDRRDEESEHSIEMQLPFI 191
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 434 ATRQFDRMDEQTDENEHSIEMHLPY 508
ATR FD MD + +E+EHSIEM LP+
Sbjct: 166 ATRHFDLMDRRDEESEHSIEMQLPF 190
>AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical
protein F54D7.2 protein.
Length = 393
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 194 FDSHKSSCRDSSLPFSVY-QHPAW 126
FDS+K +C D+S P SVY HP W
Sbjct: 24 FDSYKYNCVDNS-PLSVYVSHPFW 46
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 499 VHFNGMLIFIGLLVHSIELTCGLSSAYI 416
++FN + I G+ H++EL C S+A+I
Sbjct: 1684 LYFNSVPISTGMATHTLELACDSSAAWI 1711
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 499 VHFNGMLIFIGLLVHSIELTCGLSSAYI 416
++FN + I G+ H++EL C S+A+I
Sbjct: 1684 LYFNSVPISTGMATHTLELACDSSAAWI 1711
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 499 VHFNGMLIFIGLLVHSIELTCGLSSAYI 416
++FN + I G+ H++EL C S+A+I
Sbjct: 1684 LYFNSVPISTGMATHTLELACDSSAAWI 1711
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 499 VHFNGMLIFIGLLVHSIELTCGLSSAYI 416
++FN + I G+ H++EL C S+A+I
Sbjct: 1684 LYFNSVPISTGMATHTLELACDSSAAWI 1711
>Z81089-5|CAD89731.2| 933|Caenorhabditis elegans Hypothetical
protein F53H4.6 protein.
Length = 933
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 320 IGPITPREDRRMRSFVPRQVPDSPLRSHHR*TNIRGAEATRQFDRMDEQTDENE 481
I P DR+ P +PD P+ H+ T + + +R E+T+ E
Sbjct: 89 IKPTNTSNDRKSLKRRPDALPDPPIEKRHKQTTVDSDDDVMIIERTPEKTNSFE 142
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 418 ICLSMVRS*RGVWYLSRDERAHPAILTWCDGPNMKIRLTTTGLTCLYAYAEQ 263
I LSM++ GVWY++ D A P + NMK ++ L +Y YA++
Sbjct: 411 ITLSMLQ---GVWYIAADLNADPKMFLQSTVINMKRIQNSSNLELIY-YAQK 458
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 418 ICLSMVRS*RGVWYLSRDERAHPAILTWCDGPNMKIRLTTTGLTCLYAYAEQ 263
I LSM++ GVWY++ D A P + NMK ++ L +Y YA++
Sbjct: 411 ITLSMLQ---GVWYIAADLNADPKMFLQSTVINMKRIQNSSNLELIY-YAQK 458
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,360
Number of Sequences: 27780
Number of extensions: 347641
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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