Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00392
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.70 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.6  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 410 IDGEIVEGSLVLVEGRKSASCDPHV 336
           I G+IV G L  V  +  ASC P+V
Sbjct: 53  IPGDIVLGGLFPVHEKGGASCGPNV 77


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 615 WRQYRSVLGFLLWSQRAY 562
           W+QY  VLG  L   RAY
Sbjct: 102 WQQYPWVLGVSLCKIRAY 119


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/40 (22%), Positives = 16/40 (40%)
 Frame = +1

Query: 166 SRQLDLWLSKADLTHGPARAIIAPHAGYSYAALARRTHID 285
           S + D W  K  L   P  +++    GY    + +   +D
Sbjct: 381 SEENDFWQPKPTLEDAPQNSLLPNFVGYKGKHIGKSGKVD 420


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 154 HFRCTNIQHGMLDD 113
           +FRC+N+ H M ++
Sbjct: 443 YFRCSNLNHMMREE 456


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 364 RPSTSTRLPSTISPSINKYTRS*GHTSIR*NGRAD 468
           RP       +++   + KYTRS  H SI    R++
Sbjct: 225 RPKGINGRRASLFCGLQKYTRSFAHQSINKEARSN 259


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 508  LAKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVIS 651
            L +V++E+ +     P+L+  LTP +   Y    +P +   Q  L ++
Sbjct: 870  LVEVLDEFPSVRPFAPLLLLHLTPLQPRFYSISSSPDVHQGQIHLTVA 917


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 364 RPSTSTRLPSTISPSINKYTRS*GHTSIR*NGRAD 468
           RP       +++   + KYTRS  H SI    R++
Sbjct: 220 RPKGINGRRASLFCGLQKYTRSFAHQSINKEARSN 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,429
Number of Sequences: 438
Number of extensions: 4043
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)