Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00390
(637 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 106 5e-22
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 91 2e-17
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 88 2e-16
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 82 9e-15
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 78 2e-13
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 78 2e-13
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 77 4e-13
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 73 6e-12
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 71 2e-11
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 65 1e-09
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 63 6e-09
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 62 8e-09
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 61 2e-08
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 60 3e-08
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 60 4e-08
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 60 6e-08
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 49 8e-05
UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4; Pyrobac... 42 0.016
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 41 0.022
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.12
UniRef50_Q0UNB4 Cluster: Predicted protein; n=1; Phaeosphaeria n... 37 0.47
UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3; Desulf... 36 0.62
UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga ... 34 2.5
UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3; Bacill... 34 3.3
UniRef50_A0LE03 Cluster: Serine/threonine protein kinase; n=1; M... 34 3.3
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1; Thermof... 34 3.3
UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2; Sulfol... 34 3.3
UniRef50_A0U836 Cluster: Putative uncharacterized protein; n=5; ... 33 7.6
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 106 bits (254), Expect = 5e-22
Identities = 47/77 (61%), Positives = 60/77 (77%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
WFN + I ++ ++ +APRPA+GP+RPIVRCPTVRYHTKVRAGRGF+L E+R A
Sbjct: 25 WFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84
Query: 204 GLNPVFARTIGIAVDPR 254
G++ ARTIGI+VDPR
Sbjct: 85 GIHKKVARTIGISVDPR 101
Score = 101 bits (243), Expect = 1e-20
Identities = 53/85 (62%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
RNKS ESLQ NVQR+KEYR++LILFP K KG+++ EE KLATQL GP+MPV+
Sbjct: 103 RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYK 162
Query: 434 KSVARPITEDEKNFKAYQYLRGARS 508
K AR ITE+EKNFKA+ LR AR+
Sbjct: 163 KEKARVITEEEKNFKAFASLRMARA 187
Score = 33.1 bits (72), Expect = 5.8
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKAR 84
WQR V T QPAR+ RR++ R KAR
Sbjct: 18 WQRRVATWFNQPARKIRRRKARQAKAR 44
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 91.5 bits (217), Expect = 2e-17
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = +3
Query: 87 VAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
+AP+PA+ P+RPIVRCPTVRYHTKVR GRGF+L EIR AG++ ARTI I+VDP+
Sbjct: 4 IAPQPASSPIRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPK 59
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 87.8 bits (208), Expect = 2e-16
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = +3
Query: 30 NPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGL 209
+PA + + A+ N + +APRPA GPLRPIVRCPTVRY+ K R GRGFT +E+ AAG
Sbjct: 48 DPARAQRRRNAR-NLRAKKIAPRPAEGPLRPIVRCPTVRYNMKTRLGRGFTPKELVAAGF 106
Query: 210 NPVFARTIGIAVDPRDATS 266
+P AR GIAVD R A S
Sbjct: 107 DPALARFQGIAVDARRAHS 125
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 82.2 bits (194), Expect = 9e-15
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
WFN + +KA K+S +AP+P LRP+V CP+ RY +KVRAGRGFT +E++ A
Sbjct: 24 WFNQPMKKLRRKALRAKKSRQLAPKPTE-LLRPLVHCPSERYKSKVRAGRGFTFQELKQA 82
Query: 204 GLNPVFARTIGIAVDPR 254
G++ +AR+ G+AVDPR
Sbjct: 83 GMSDKYARSFGVAVDPR 99
Score = 42.3 bits (95), Expect = 0.009
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFPKGK-KVLKGEANEEERKLATQLRGPLMPVQQPAP 433
RN+ ES+ N+QR+ EY++RLI P K KVLK + + L V+
Sbjct: 101 RNRCTESIAANIQRLIEYKSRLIFLPDSKNKVLKIDDGKN-----------LNVVKVVPG 149
Query: 434 KSVARPITEDEKNFKAYQYLRGAR 505
K A + E+EK F+A+ LR AR
Sbjct: 150 KVKALKVGEEEKKFEAFVTLRRAR 173
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 78.2 bits (184), Expect = 2e-13
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +3
Query: 27 FNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAG 206
F+ A ++ +++ +APRP LRP+VR PTV+Y+ KVRAGRGFTL E++A G
Sbjct: 26 FDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVG 84
Query: 207 LNPVFARTIGIAVDPR 254
+ P +ARTIGI+VD R
Sbjct: 85 IAPKYARTIGISVDHR 100
Score = 49.2 bits (112), Expect = 8e-05
Identities = 31/84 (36%), Positives = 49/84 (58%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 436
+NKS E+ NV R++EY+++L++F K K + + E+ AT PV+QPAP+
Sbjct: 102 QNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSAT------FPVEQPAPE 155
Query: 437 SVARPITEDEKNFKAYQYLRGARS 508
S R + E+ AY+ LR AR+
Sbjct: 156 SGLRAVEVPEQT--AYRTLRLARN 177
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 78.2 bits (184), Expect = 2e-13
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 WFN-PASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRA 200
WFN PA T + A+ K++ + PRP +GPLRP+V T++Y+ KVRAG+GFTL E++
Sbjct: 23 WFNQPARKTRRRVAR-QKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKV 81
Query: 201 AGLNPVFARTIGIAVDPR 254
AG+ A TIGI+VD R
Sbjct: 82 AGIPKKLAPTIGISVDHR 99
Score = 67.3 bits (157), Expect = 3e-10
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
+N+S+E LQ NVQR+K Y+A+L++FP + ++V G++ EE ATQ++G MP+
Sbjct: 101 KNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKA 160
Query: 434 KSVARPITEDEKNFKAYQYLRGARS 508
+T D K FKAY +R R+
Sbjct: 161 AMELVKLTADLKAFKAYDKIRLERT 185
Score = 34.7 bits (76), Expect = 1.9
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
WQ +VKT QPAR+ RR+ R KKA
Sbjct: 16 WQNYVKTWFNQPARKTRRRVARQKKA 41
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 77.0 bits (181), Expect = 4e-13
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +3
Query: 84 AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
AVAPRP LRP+VRCPTV+Y+ +VR GRGFTL E++ AG+ ART+GIAVD R
Sbjct: 62 AVAPRPV-DKLRPVVRCPTVKYNRRVRVGRGFTLAELKEAGIPKKLARTVGIAVDHR 117
Score = 37.9 bits (84), Expect = 0.20
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 260 NKSVESLQINVQRIKEYRARLILFPK 337
N S ESL NV R+K+Y+ARLILFP+
Sbjct: 120 NYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 72.9 bits (171), Expect = 6e-12
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +3
Query: 114 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
LRP VRCPT+RY+TK+R+GRGFT+ E++AAGL +AR++GI VD R
Sbjct: 54 LRPAVRCPTLRYNTKIRSGRGFTIEEVKAAGLGKKYARSVGIPVDHR 100
Score = 61.7 bits (143), Expect = 1e-08
Identities = 34/83 (40%), Positives = 48/83 (57%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 436
RNKS ESL++NV+RIK Y+ARL++ PK K K + + A + ++P+
Sbjct: 102 RNKSEESLKLNVERIKAYQARLVVIPKLTKKNKDKKVDLSNVEAVRQVQSVLPLPAGTEA 161
Query: 437 SVARPITEDEKNFKAYQYLRGAR 505
R IT +EK F AY+ LR AR
Sbjct: 162 EKPRAITSEEKEFNAYETLRKAR 184
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 70.9 bits (166), Expect = 2e-11
Identities = 34/56 (60%), Positives = 41/56 (73%)
Frame = +3
Query: 87 VAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
+ PRP LRP V CPTVRY+ K R GRGF+L E++AAG+ P +ARTIGI VD R
Sbjct: 62 IFPRPLKA-LRPQVNCPTVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRR 116
Score = 61.7 bits (143), Expect = 1e-08
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLR-----GPLMPV 418
+NKS E + INVQR+K Y ++L+LFP KK KG+A EEE K ATQ R + +
Sbjct: 118 KNKSEEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDRSRYGTAAVGGL 177
Query: 419 QQPAPKSVARPITEDEKNFKAYQYLR 496
PA + R +TE+E K Y++L+
Sbjct: 178 VTPA-REAPRKVTEEESTKKMYKFLK 202
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 65.3 bits (152), Expect = 1e-09
Identities = 35/69 (50%), Positives = 42/69 (60%)
Frame = +3
Query: 114 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRDATSLLNHCKSMF 293
L P+V CPT RY+ K R G+GFTL EI+A L P AR+IGI VD R N C+
Sbjct: 53 LHPVVHCPTQRYNYKTRLGKGFTLEEIKAVKLTPSAARSIGIIVDKRRK----NRCEESL 108
Query: 294 KE*RNTERV 320
KE N ER+
Sbjct: 109 KE--NAERL 115
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 62.9 bits (146), Expect = 6e-09
Identities = 30/77 (38%), Positives = 52/77 (67%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
++N ++ ++ + ++ + +PRP LRP+VR T++Y++ + GRGF+L E++ A
Sbjct: 23 FYNQPAAKRRRQLRRRAQALSASPRPVE-LLRPVVRGQTIKYNSVQKLGRGFSLIELKEA 81
Query: 204 GLNPVFARTIGIAVDPR 254
GLN FART+GI+VD R
Sbjct: 82 GLNAAFARTVGISVDHR 98
Score = 36.3 bits (80), Expect = 0.62
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFPK--GKK---VLKGEANEEERKLATQLRGPLMPVQ 421
RN + E L NV+R+K Y ++L+L+P+ GK V+K NE Q P +
Sbjct: 100 RNLNQEELNNNVKRLKAYLSKLVLYPRVAGKPKNGVVKDSTNEVVAHPVAQNTNPEVLTF 159
Query: 422 QPAPK-SVARPITEDEKNFKAYQYLR 496
Q PK A I+++ + Y+ LR
Sbjct: 160 QRTPKREKATVISKELRAKNVYRRLR 185
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 62.5 bits (145), Expect = 8e-09
Identities = 35/77 (45%), Positives = 42/77 (54%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
W+N ++ K RP G LRPIV PT RY+ K R GRGFTL E+ A
Sbjct: 23 WYNQPGRKQSRRIARQKAVAEAGFRPV-GMLRPIVHPPTQRYNMKTRLGRGFTLEELSAC 81
Query: 204 GLNPVFARTIGIAVDPR 254
G+N A +IGIAVD R
Sbjct: 82 GINKKAAMSIGIAVDHR 98
Score = 41.9 bits (94), Expect = 0.012
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +2
Query: 266 SVESLQINVQRIKEYRARLILFP-KGKKVLKG-------EANEEERKLATQLRGPLMPVQ 421
S E+ QINV R+K+Y ++L P KGKK KG A EE + L P++
Sbjct: 103 SEETFQINVDRLKKYINGIVLQPRKGKKTKKGFAGIPNDSAREEFKALKNVSHEKAFPIK 162
Query: 422 QPAPKSVARPITEDEKNFKAYQYLR 496
IT +E+ F+A+ LR
Sbjct: 163 AQTLAVKTHVITPEERKFRAFSTLR 187
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/69 (40%), Positives = 44/69 (63%)
Frame = +3
Query: 3 LAKIC*NWFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFT 182
LA++C + PA +K K++ + PRP +GPLRP+V T++Y+ KV +GFT
Sbjct: 15 LAELCQDMVQPACQENQKKNCEEKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVSTXKGFT 74
Query: 183 LREIRAAGL 209
L E++AAG+
Sbjct: 75 LEELKAAGI 83
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 60.5 bits (140), Expect = 3e-08
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +3
Query: 108 GPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
G LRP+V P+ RY+ K+R GRGFTL+E++ AGL AR++G+AVD R
Sbjct: 51 GYLRPLVHMPSRRYNYKLRFGRGFTLQELKVAGLGKKVARSVGVAVDHR 99
Score = 52.8 bits (121), Expect = 7e-06
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Frame = +2
Query: 260 NKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA-------NEEERKLA--TQLRGPLM 412
NK ESL +NV R+K Y ++L+LFP+ K KG A E+ R LA Q +M
Sbjct: 102 NKCAESLNLNVNRLKTYLSKLVLFPRKKHAKKGFAGLPSDTPREKLRTLALTKQSVKKVM 161
Query: 413 PVQQPAPKSVARPITEDEKNFKAYQYLRGAR 505
PV Q K R +TE + + Y LR AR
Sbjct: 162 PVVQEFVKEPPREVTEKDTSVNVYHKLRVAR 192
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 60.1 bits (139), Expect = 4e-08
Identities = 31/57 (54%), Positives = 37/57 (64%)
Frame = +3
Query: 84 AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
A+ P P LRPIVRCPT++Y+ R GRGFT E AGL+ AR +GIAVD R
Sbjct: 42 ALFPMPLK-KLRPIVRCPTIKYNRNERLGRGFTAAECEKAGLDYRHARRLGIAVDLR 97
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 59.7 bits (138), Expect = 6e-08
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = +3
Query: 114 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
L+P V C R++ K+R GRGF+L+E+RAA ++ ARTIGIAVDPR
Sbjct: 52 LKPSVHCMNQRFNYKLRLGRGFSLKELRAAKIDKNLARTIGIAVDPR 98
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 49.2 bits (112), Expect = 8e-05
Identities = 19/47 (40%), Positives = 35/47 (74%)
Frame = +3
Query: 114 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
L+P+V+CPT ++TK++ GRGF+++EI+ + + A + GI++D R
Sbjct: 54 LKPLVKCPTRMHNTKIKLGRGFSIQEIKKSMIKLKTATSYGISIDKR 100
>UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4;
Pyrobaculum|Rep: 60S ribosomal protein L13 - Pyrobaculum
aerophilum
Length = 159
Score = 41.5 bits (93), Expect = 0.016
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +3
Query: 117 RPIVRCPTVRYH---TKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRDATSLLNHCKS 287
+P+V+ P H K + GRGF++ E+RA GL+ AR +GI VD R TS + ++
Sbjct: 6 KPLVKTPAKITHGGVVKWKYGRGFSIGELRALGLSVDQARLLGIPVDERRETSWPQNIEA 65
Query: 288 MFK 296
+ K
Sbjct: 66 LRK 68
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 41.1 bits (92), Expect = 0.022
Identities = 23/46 (50%), Positives = 24/46 (52%)
Frame = -1
Query: 229 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 92
VRA T S V P P R L YR VG TIGR+ PA GRG
Sbjct: 398 VRARTMAITRTFNSSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.12
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 120 PIVRCPTVRYHTKVRAGRGFTLREIR 197
PIV+C T++Y+ K RAGRGF L E++
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELK 72
>UniRef50_Q0UNB4 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 365
Score = 36.7 bits (81), Expect = 0.47
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 332 PKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 496
PKGKK K A EEE +A Q+ P+ PV K V ++E++K YQ L+
Sbjct: 297 PKGKKQKKKSAVEEEGSVAPQVAQPVKPVH--IDKFVRPTVSENKKPSSRYQILQ 349
>UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3;
Desulfurococcales|Rep: 50S ribosomal protein L13e -
Aeropyrum pernix
Length = 80
Score = 36.3 bits (80), Expect = 0.62
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 159 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRDAT 263
VR GRGF+L E+ AGL+ AR +G+ VD R T
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRT 57
>UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L13 -
Caldivirga maquilingensis IC-167
Length = 144
Score = 34.3 bits (75), Expect = 2.5
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 156 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
K++ GRGF++ EI+A L AR +GI VD R
Sbjct: 17 KMKQGRGFSISEIKAINLTVNEARLLGIPVDTR 49
>UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3;
Bacillus|Rep: Polyketide synthase type I - Bacillus
amyloliquefaciens
Length = 1917
Score = 33.9 bits (74), Expect = 3.3
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +2
Query: 287 NVQRIKEYRARLILF-----PKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARP 451
N +R+KEY ARL++F P+G L + + + +L LRG L V A SV
Sbjct: 895 NPERLKEYAARLLMFLKDEAPEGSGPLYDKIDTMQNQLEDALRGVLAEVLHVASGSV--- 951
Query: 452 ITEDEKNFKAY 484
+DE+++K +
Sbjct: 952 --DDEQDWKEF 960
>UniRef50_A0LE03 Cluster: Serine/threonine protein kinase; n=1;
Magnetococcus sp. MC-1|Rep: Serine/threonine protein
kinase - Magnetococcus sp. (strain MC-1)
Length = 1143
Score = 33.9 bits (74), Expect = 3.3
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 260 NKSVESLQINVQRIKEYRAR---LILFPKGKKVLKGEANEEERKLATQLRGPLM-PVQQP 427
N+ + LQ N +R + + R ++L P+ +++ A ER L+ P P
Sbjct: 738 NRLEQRLQANKERYRTTQLRGDEMLLKPEAGEIIPNSAPPRERDEPFMASQNLITPAAPP 797
Query: 428 APKSVARPITEDEKNFKA 481
AP+S A + EDEKNF A
Sbjct: 798 APRS-ASFLEEDEKNFTA 814
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 33.9 bits (74), Expect = 3.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKAR 84
WQR+VKT QP R+ RR+ + K A+
Sbjct: 21 WQRYVKTWFNQPGRKLRRQARQTKAAK 47
>UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1;
Thermofilum pendens Hrk 5|Rep: 60S ribosomal protein L13
- Thermofilum pendens (strain Hrk 5)
Length = 157
Score = 33.9 bits (74), Expect = 3.3
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 111 PLRPIVRCPTVRYHTKV-----RAGRGFTLREIRAAGLNPVFARTIGIAVDPRDAT 263
P PIV +R + V + GRGF+ E++A GL AR +GI VD R T
Sbjct: 9 PPEPIVNAVKLRRYGGVPPRPLKVGRGFSEGEVKALGLTVKEARLLGIYVDERRKT 64
>UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2;
Sulfolobus solfataricus|Rep: 50S ribosomal protein L13e
- Sulfolobus solfataricus
Length = 79
Score = 33.9 bits (74), Expect = 3.3
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 162 RAGRGFTLREIRAAGLNPVFARTIGIAVDPR 254
R GRGF++ E+ AGLN AR +GI VD R
Sbjct: 25 RIGRGFSVGELEKAGLNINKARKLGIFVDIR 55
>UniRef50_A0U836 Cluster: Putative uncharacterized protein; n=5;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia cenocepacia MC0-3
Length = 699
Score = 32.7 bits (71), Expect = 7.6
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 123 IVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRDATSLLNH 278
I+R P VR T+ GRG ++++ L+PV R + A+ RDA + H
Sbjct: 261 IIRTPRVRPSTRCAPGRGLAVQQM-LDELDPVGDRHLRAALQVRDAADVAGH 311
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,679,513
Number of Sequences: 1657284
Number of extensions: 11715844
Number of successful extensions: 32665
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 31633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32651
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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