Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00390
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    73   3e-14
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   4.0  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   4.0  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.9  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   6.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.9  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 36/77 (46%), Positives = 50/77 (64%)
 Frame = +3

Query: 24  WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
           WFN     + ++     ++  +APRP    +RP V+ PT+RY+ KVRAGRGFTL E++AA
Sbjct: 25  WFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAA 83

Query: 204 GLNPVFARTIGIAVDPR 254
           G++   A TIGI VD R
Sbjct: 84  GVSRRVASTIGIPVDHR 100



 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
           RN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A 
Sbjct: 102 RNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAV 160

Query: 434 KSVARPITEDEKNFKAYQYLRGARS 508
           +  A+PITE+ KNF A+  L   R+
Sbjct: 161 EE-AKPITEEAKNFNAFSTLSNERA 184



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 4  WQRFVKTGLTQPARRYRRKQNRIKKA 81
          WQR+VKT   QP R+ RR+Q R  KA
Sbjct: 18 WQRYVKTWFNQPGRKLRRRQARQTKA 43


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 392 QLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSLPNSS 523
           Q   P+ PVQ   P   A+P  ED    +  + LR     P +S
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLRQMDITPTAS 473


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 353 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 466
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -3

Query: 188  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLAF-FILFC 60
            T   +STG+Y  M    +   W S   T    C TWSY  ++ +I  C
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDYITGC 1262


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 169 VEDSLFVKLGPQD*TQYLPERLELL 243
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 87  VAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREI 194
           +APRP       I  CPT ++   +RA  G    EI
Sbjct: 267 IAPRPHNSGHYTIEACPTSQFEAHLRAICGLPFSEI 302


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 599 TSLAVGAFVTSSGFSAASFNLLARIPTSLARSELL 495
           TSL++ +  TSS FS+AS +  + I +S++ S  +
Sbjct: 590 TSLSISSSSTSSTFSSASTSSPSSISSSISSSSTI 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,530
Number of Sequences: 5004
Number of extensions: 49440
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)