Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00390
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 85 4e-17
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 84 1e-16
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737... 30 1.8
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 4.1
02_04_0147 + 20194244-20195717,20195953-20195969 29 4.1
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 4.1
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 5.4
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141... 27 9.4
01_06_1481 - 37675793-37677325 27 9.4
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 85.0 bits (201), Expect = 4e-17
Identities = 39/77 (50%), Positives = 54/77 (70%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
WFN + ++ K++ + PRP +GPLRPIV+C T++Y+ K RAGRGFTL E++AA
Sbjct: 24 WFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEELKAA 83
Query: 204 GLNPVFARTIGIAVDPR 254
G+ FA TIGI+VD R
Sbjct: 84 GIPKKFAPTIGISVDHR 100
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE ATQ++G MP+ +
Sbjct: 102 KNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 161
Query: 434 KSV-ARPITEDEKNFKAYQYLRGAR 505
+SV +T+D K FKAY LR R
Sbjct: 162 RSVEVVKVTDDMKAFKAYAKLRVER 186
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
WQ +VKT QPAR+ RR+ R KKA
Sbjct: 17 WQNYVKTWFNQPARKQRRRIARQKKA 42
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
WFN + ++ K++ + PRP +GPLRPIV+C T++Y+ K RAGRGFTL E++AA
Sbjct: 24 WFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEELKAA 83
Query: 204 GLNPVFARTIGIAVDPR 254
G+ +A TIGI+VD R
Sbjct: 84 GIPKKYAPTIGISVDHR 100
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE ATQ++G MP+ +
Sbjct: 102 KNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEK 161
Query: 434 KSV-ARPITEDEKNFKAYQYLRGAR 505
+SV +T++ K FKAY LR R
Sbjct: 162 RSVEVVKVTDEMKAFKAYAKLRVER 186
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
WQ +VKT QPAR+ RR+ R KKA
Sbjct: 17 WQNYVKTWFNQPARKQRRRIARQKKA 42
>01_05_0270 -
20271859-20272866,20273043-20273058,20273455-20273756,
20273932-20274231
Length = 541
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -3
Query: 563 GFSAASFNLLARIPTSLARSELLSGIDKL*SSFHLQ 456
G SAASFN+ +++ +S A +G+D L +F+LQ
Sbjct: 18 GSSAASFNIYSQVSSSSAAHAPRAGLDGLDLNFNLQ 53
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 249 DLQQFQSFGQILGSILRP 196
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 125 YRT*RPSCRTWSYGLAFF 72
Y T RP CR W + L+FF
Sbjct: 264 YHTARPGCRYWVFSLSFF 281
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 249 DLQQFQSFGQILGSILRP 196
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 269 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 397
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>03_01_0176 -
1416316-1416405,1416705-1416761,1416885-1417010,
1417944-1418150,1418235-1418714
Length = 319
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 268 RLVASRGSTAIPIVRANTGFNPAALISRRVNPLPARTL 155
RLVA+R P A +P AL+ PLPAR L
Sbjct: 5 RLVAARAPLLSPAAVAAAHRSPPALLRLAFAPLPARRL 42
>01_06_1481 - 37675793-37677325
Length = 510
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 590 AVGAFVTSSGFSAASFNLLARIP 522
+ GAFVT G+++AS + AR+P
Sbjct: 363 STGAFVTHCGWNSASEGITARVP 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,016
Number of Sequences: 37544
Number of extensions: 320314
Number of successful extensions: 927
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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