Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00390
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 86 2e-17
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 32 0.34
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 28 5.5
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3) 28 7.3
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4) 28 7.3
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.7
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7) 27 9.7
SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1) 27 9.7
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
WF+ ++ ++ +APRP AG LRPIVRCPT +Y+TKVRAGRGFTL E++AA
Sbjct: 25 WFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPTFKYNTKVRAGRGFTLDELKAA 84
Query: 204 GLNPVFARTIGIAVDPR 254
G+ A TIGIAVD R
Sbjct: 85 GIPRKVAPTIGIAVDHR 101
Score = 77.4 bits (182), Expect = 9e-15
Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
+N+S ESLQ NVQR+KEY+++LI+FP K K +G++ + A QL+GP+MP+ Q +
Sbjct: 103 KNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESV 162
Query: 434 KSVARPITEDEK 469
ARPITEDEK
Sbjct: 163 PIKARPITEDEK 174
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
WQR+VKT QP R+ RR+ R KA
Sbjct: 18 WQRYVKTWFDQPGRKKRRRVARQIKA 43
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 290 VQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 394
+ RI+E R ++F GK V G +EE+ KLA +
Sbjct: 319 IMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 253 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 128
+GS V ++T NP L++R N +P R +L+W++ G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418
>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
Length = 449
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 253 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 107
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226
>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
Length = 318
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 253 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 107
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 66 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 493 ERSSLLAKLVGIRAKRLKDAAENPD 567
+ S +LAK V RA RL AE+PD
Sbjct: 1269 QHSDMLAKAVAARAARLAAEAEHPD 1293
>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1219
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -3
Query: 257 VTGIYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLA 78
VTGI + + YWV S ++ + S+ FS+ N R + R S+ LA
Sbjct: 1018 VTGISTQGQQDANYWVTSYALQYS-LDGSSFTTFSVSRNPKIFEGNKDRSTVR--SHALA 1074
Query: 77 FFILFCFLRYRRAGW 33
IL ++R R W
Sbjct: 1075 MPILARYVRVRPMTW 1089
>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
Length = 154
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 253 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 128
+GS A V +T NP L++R N +P R +L+W++ +
Sbjct: 60 KGSWAALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEK 103
>SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)
Length = 165
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 253 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 128
+GS V ++T NP L++R N +P R L+W++ G +
Sbjct: 110 KGSWVALTVESSTLANPNILLARIQNLMPGRKALLLWFKATGKK 153
>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 99 PAAGPLRPIVRCPTVR-YHTKVRA--GRGFTLREIRAAG 206
P P R + +R YHTK A GRG TL IRA G
Sbjct: 502 PLILPKRGHITTLVIRHYHTKKSAHQGRGITLSSIRAGG 540
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,511
Number of Sequences: 59808
Number of extensions: 358363
Number of successful extensions: 951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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