Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00390
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 84 9e-17
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 64 8e-11
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 30 1.2
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 30 1.2
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81116-7|CAB03306.1| 669|Caenorhabditis elegans Hypothetical pr... 27 8.5
U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical pr... 27 8.5
U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical pr... 27 8.5
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 83.8 bits (198), Expect = 9e-17
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
WF+ + + ++ ++ +APRP AG LR +VRCP RY+TK R GRGF+L+E++AA
Sbjct: 25 WFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAA 84
Query: 204 GLNPVFARTIGIAVDPR 254
G++ ARTIGIAVD R
Sbjct: 85 GISQAQARTIGIAVDVR 101
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 436
NK+ E L+ N R+KEY+A+LILFP K KG+++ EE K+A QLRG ++P+
Sbjct: 104 NKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITF 163
Query: 437 SVARPITEDEKNFKAYQYLRGARS 508
R +T+ E+ + ++ LR R+
Sbjct: 164 DEPRQVTDAERKVEIFRLLRKERA 187
Score = 34.3 bits (75), Expect = 0.074
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
W + +KT QPAR+ RR+QNR KA
Sbjct: 18 WHKRIKTWFDQPARKLRRRQNRQAKA 43
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = +3
Query: 24 WFNPASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
WF+ + + ++ ++ +APRP AG LR +VRCP RY+TK R GRGF+L+E++AA
Sbjct: 25 WFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAA 84
Query: 204 GLN 212
N
Sbjct: 85 EEN 87
Score = 34.3 bits (75), Expect = 0.074
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
W + +KT QPAR+ RR+QNR KA
Sbjct: 18 WHKRIKTWFDQPARKLRRRQNRQAKA 43
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 323 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 478
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 323 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 478
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 323 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 478
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 484 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 353
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 484 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 353
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>Z81116-7|CAB03306.1| 669|Caenorhabditis elegans Hypothetical
protein T06C12.8 protein.
Length = 669
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -3
Query: 113 RPSCRTWSYGLAFFILFCFLRY-----RRAGWVKPVLT 15
+P+ T S ++F LFCFL WVKP++T
Sbjct: 249 KPTSTTISKIFSYFFLFCFLYITFFACHLGSWVKPMIT 286
>U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical
protein F18A1.6a protein.
Length = 731
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 338 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
GK + NEE+R+LA LR + PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237
>U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical
protein F18A1.6b protein.
Length = 734
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 338 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
GK + NEE+R+LA LR + PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,475,176
Number of Sequences: 27780
Number of extensions: 274973
Number of successful extensions: 744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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