Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00390
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 79 2e-15
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 79 2e-15
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 78 4e-15
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 75 5e-14
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 32 0.28
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.37
At5g23580.1 68418.m02767 calcium-dependent protein kinase 9 (CDP... 31 0.64
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ... 30 1.5
At5g12280.1 68418.m01444 hypothetical protein 29 2.6
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 3.4
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 3.4
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 29 3.4
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 28 6.0
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac... 27 7.9
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 WFN-PASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRA 200
WFN PA T + A+ K++ + PRP +GPLRP+V T++Y+ KVR G+GFTL E++A
Sbjct: 23 WFNQPARKTRRRIAR-QKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKA 81
Query: 201 AGLNPVFARTIGIAVDPR 254
AG+ A TIGIAVD R
Sbjct: 82 AGIPKKLAPTIGIAVDHR 99
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
+N+S+E LQ NVQR+K Y+ +L++FP + +KV G++ EE ATQ++G +P+ + P
Sbjct: 101 KNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160
Query: 434 KSVARPITEDEKNFKAYQYLRGARS 508
+T + K+FKA+ +R R+
Sbjct: 161 TMELVKLTSEMKSFKAFDKIRLERT 185
Score = 34.3 bits (75), Expect = 0.069
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
WQ +VKT QPAR+ RR+ R KKA
Sbjct: 16 WQNYVKTWFNQPARKTRRRIARQKKA 41
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 WFN-PASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRA 200
WFN PA T + A+ K++ + PRP +GPLRP+V T++Y+ KVR G+GFTL E++A
Sbjct: 23 WFNQPARKTRRRIAR-QKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKA 81
Query: 201 AGLNPVFARTIGIAVDPR 254
AG+ A TIGIAVD R
Sbjct: 82 AGIPKKLAPTIGIAVDHR 99
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
+N+S+E LQ NVQR+K Y+ +L++FP + +KV G++ EE ATQ++G +P+ + P
Sbjct: 101 KNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160
Query: 434 KSVARPITEDEKNFKAYQYLRGARS 508
+T + K+FKA+ +R R+
Sbjct: 161 TMELVKLTSEMKSFKAFDKIRLERT 185
Score = 34.3 bits (75), Expect = 0.069
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
WQ +VKT QPAR+ RR+ R KKA
Sbjct: 16 WQNYVKTWFNQPARKTRRRIARQKKA 41
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 78.2 bits (184), Expect = 4e-15
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 WFN-PASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRA 200
WFN PA T + A+ K++ + PRP +GPLRP+V T++Y+ KVRAG+GFTL E++
Sbjct: 23 WFNQPARKTRRRVAR-QKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKV 81
Query: 201 AGLNPVFARTIGIAVDPR 254
AG+ A TIGI+VD R
Sbjct: 82 AGIPKKLAPTIGISVDHR 99
Score = 67.3 bits (157), Expect = 8e-12
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 433
+N+S+E LQ NVQR+K Y+A+L++FP + ++V G++ EE ATQ++G MP+
Sbjct: 101 KNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKA 160
Query: 434 KSVARPITEDEKNFKAYQYLRGARS 508
+T D K FKAY +R R+
Sbjct: 161 AMELVKLTADLKAFKAYDKIRLERT 185
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
WQ +VKT QPAR+ RR+ R KKA
Sbjct: 16 WQNYVKTWFNQPARKTRRRVARQKKA 41
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 74.5 bits (175), Expect = 5e-14
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +3
Query: 27 FN-PASSTIPQKAK*NKES*AVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAA 203
FN PA T + A+ NK + PRP AGP+RP+V T+ Y+ KVRAG+GFTL E++AA
Sbjct: 24 FNQPAMKTRRRIARQNKAV-KIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAA 82
Query: 204 GLNPVFARTIGIAVD 248
G+ A TIGI+VD
Sbjct: 83 GIPKKLAPTIGISVD 97
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 RNKSVESLQINVQRIKEYRARLILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAP 433
+N+S+E Q NVQR+K Y+A+L++FP+ + +K G++ ++E ATQ++ MP+ + P
Sbjct: 101 KNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMP 160
Query: 434 KSVARPITEDEKNFKAYQYLR 496
+T D K F AY +R
Sbjct: 161 TMELVKLTSDMKLFNAYDKIR 181
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 4 WQRFVKTGLTQPARRYRRKQNRIKKA 81
W+ +VKT QPA + RR+ R KA
Sbjct: 16 WENYVKTSFNQPAMKTRRRIARQNKA 41
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 335 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQY 490
KGK++L+ A E + T P P+P+S+ TE E+N + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 229 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 95
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At5g23580.1 68418.m02767 calcium-dependent protein kinase 9 (CDPK9)
identical to calcium-dependent protein kinase
[Arabidopsis thaliana] gi|836938|gb|AAA67653; contains
protein kinase domain, Pfam:PF00069; contains EF hand
domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 490
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 203 CGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLAFFILFC 60
C P SE AY+ + P HY P C WS G+ +IL C
Sbjct: 174 CTPGEAFSELVGSAYY-VAPEVLHKHYG---PECDVWSAGVILYILLC 217
>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 410
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -1
Query: 379 TFFFIGLTLQHLFAFREQYKTRSVFLYSLNIDLQ*FNRLVASRGSTAI--PIVRANTGFN 206
TFF GLT HL+ T F YS + N+ V PI + F
Sbjct: 246 TFFVGGLTCFHLYLISTNQTTYENFRYSYDRHSNPHNKGVVDNFKEIFFSPIPPSKNNFR 305
Query: 205 PAALISRRVNPLPARTLV 152
A++ R NP+P+R++V
Sbjct: 306 --AMVPRE-NPMPSRSVV 320
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 224 PNDWNCCRSP*RNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA 364
P+DW + +V+SL NV +KE + I FP K+ L+G+A
Sbjct: 353 PDDWKVVKI-----TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 249 DLQQFQSFGQILGSILRP 196
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 249 DLQQFQSFGQILGSILRP 196
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 305 EYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITED 463
E+ R++ F G+KVL +E A Q+ + V + K+ +P TED
Sbjct: 165 EFLMRVLRFCNGRKVLFNNMTNDEGVKAEQVNQVMAHVAAISKKNDEKPYTED 217
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 83 LAFFILFCFLRYRRAGWVKPV 21
L FFI FCF YR +G+++ V
Sbjct: 269 LLFFICFCFSLYRTSGYLRIV 289
>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
Length = 692
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 532 AKRLKDAAENPDDVTKAPTA 591
AK L DA E PD VT+AP A
Sbjct: 658 AKELVDAFELPDHVTRAPIA 677
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,647
Number of Sequences: 28952
Number of extensions: 256361
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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