Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00383
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.73 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.73 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.0  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 416 VDSVLEVVRKEAESCDCLQG 475
           +DS++ ++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 147 LPELSSDLVAALTSLDMYDFPHFVLFM 67
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 377  VAGAGLSEDEVVR-TEDLSERSRAXRVHGAGLQVDED 270
            ++ AG  +++  R +  L   SR   VH  G Q D D
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 474 PWRQSHDSASFRTTSKTESTSSAPSCSVPW 385
           P+R +    S  T+S+      AP+ SV W
Sbjct: 493 PYRLNKPLMSLITSSEVRQPGKAPNYSVNW 522


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 368 AGLSEDEVVRTEDLSE 321
           AGL+E+EVV  + ++E
Sbjct: 62  AGLTEEEVVLAKTIAE 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,741
Number of Sequences: 438
Number of extensions: 2134
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)