Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00383
(477 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 112 1e-25
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 110 5e-25
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 110 5e-25
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 109 1e-24
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 107 3e-24
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 107 5e-24
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 107 5e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 107 5e-24
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 105 2e-23
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 62 1e-10
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 62 2e-10
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 62 2e-10
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 62 2e-10
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 62 2e-10
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 62 2e-10
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 62 2e-10
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 52 3e-07
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 52 3e-07
At4g37190.1 68417.m05265 expressed protein 31 0.53
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 29 1.6
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 28 2.8
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 5.0
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 6.6
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 6.6
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 27 8.7
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 27 8.7
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 112 bits (269), Expect = 1e-25
Identities = 48/58 (82%), Positives = 54/58 (93%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGG 252
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGG 58
Score = 106 bits (255), Expect = 7e-24
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVF QSGAGNNWAKGHYT
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 108
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/25 (84%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+D+VL+VVRKEAE+CDCLQG
Sbjct: 109 EGAELIDAVLDVVRKEAENCDCLQG 133
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 110 bits (264), Expect = 5e-25
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCG 57
Score = 102 bits (244), Expect = 1e-22
Identities = 42/50 (84%), Positives = 48/50 (96%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVF QSGAGNNWAKGHYT
Sbjct: 58 RFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYT 107
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+DSVL+VVRKEAE+CDCLQG
Sbjct: 108 EGAELIDSVLDVVRKEAENCDCLQG 132
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 110 bits (264), Expect = 5e-25
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCG 57
Score = 102 bits (244), Expect = 1e-22
Identities = 42/50 (84%), Positives = 48/50 (96%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVF QSGAGNNWAKGHYT
Sbjct: 58 RFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYT 107
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+DSVL+VVRKEAE+CDCLQG
Sbjct: 108 EGAELIDSVLDVVRKEAENCDCLQG 132
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 109 bits (262), Expect = 1e-24
Identities = 46/57 (80%), Positives = 52/57 (91%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCG 57
Score = 106 bits (254), Expect = 9e-24
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
+YVPRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVF QSGAGNNWAKGHYT
Sbjct: 58 RYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/25 (84%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+D+VL+VVRKEAE+CDCLQG
Sbjct: 108 EGAELIDAVLDVVRKEAENCDCLQG 132
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (258), Expect = 3e-24
Identities = 48/58 (82%), Positives = 52/58 (89%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGG 58
Score = 107 bits (258), Expect = 3e-24
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
+YVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVF QSGAGNNWAKGHYT
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 108
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/25 (84%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+D+VL+VVRKEAE+CDCLQG
Sbjct: 109 EGAELIDAVLDVVRKEAENCDCLQG 133
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 107 bits (256), Expect = 5e-24
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGG 57
Score = 107 bits (256), Expect = 5e-24
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
+YVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVF QSGAGNNWAKGHYT
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Score = 48.0 bits (109), Expect = 3e-06
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+DSVL+VVRKEAE+ DCLQG
Sbjct: 108 EGAELIDSVLDVVRKEAENSDCLQG 132
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 107 bits (256), Expect = 5e-24
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
+YVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVF QSGAGNNWAKGHYT
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Score = 104 bits (250), Expect = 3e-23
Identities = 46/57 (80%), Positives = 50/57 (87%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGG 57
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+DSVL+VVRKEAE+CDCLQG
Sbjct: 108 EGAELIDSVLDVVRKEAENCDCLQG 132
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (256), Expect = 5e-24
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
+YVPRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVF QSGAGNNWAKGHYT
Sbjct: 58 RYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Score = 103 bits (247), Expect = 6e-23
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCG 57
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+DSVL+VVRKEAE+CDCLQG
Sbjct: 108 EGAELIDSVLDVVRKEAENCDCLQG 132
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 105 bits (252), Expect = 2e-23
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVF QSGAGNNWAKGHYT
Sbjct: 58 RFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Score = 104 bits (250), Expect = 3e-23
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 252
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCG 57
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +2
Query: 401 EGAELVDSVLEVVRKEAESCDCLQG 475
EGAEL+DSVL+VVRKEAE+CDCLQG
Sbjct: 108 EGAELIDSVLDVVRKEAENCDCLQG 132
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.5 bits (145), Expect = 1e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
Q+VPRA+ +DLEP +D VR+G + Q+F P+ + + A NN+A+GHYT
Sbjct: 60 QHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGG 252
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSG 59
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 404 GAELVDSVLEVVRKEAESCDCLQG 475
G E+VD+ LE +RK A++C LQG
Sbjct: 111 GREIVDTCLERLRKLADNCTGLQG 134
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 62.1 bits (144), Expect = 2e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+ VDLEP +D VR+G + Q+F P+ + + A NN+A+GHYT
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGG 252
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 404 GAELVDSVLEVVRKEAESCDCLQG 475
G E+VD L+ VRK A++C LQG
Sbjct: 111 GKEIVDLCLDRVRKLADNCTGLQG 134
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 62.1 bits (144), Expect = 2e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+ VDLEP +D VR+G + Q+F P+ + + A NN+A+GHYT
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGG 252
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 404 GAELVDSVLEVVRKEAESCDCLQG 475
G E+VD L+ VRK A++C LQG
Sbjct: 111 GKEIVDLCLDRVRKLADNCTGLQG 134
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.1 bits (144), Expect = 2e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+ VDLEP +D VR+G + Q+F P+ + + A NN+A+GHYT
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 252
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAG 59
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 404 GAELVDSVLEVVRKEAESCDCLQG 475
G E+VD L+ +RK A++C LQG
Sbjct: 111 GKEIVDLCLDRIRKLADNCTGLQG 134
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 62.1 bits (144), Expect = 2e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+ VDLEP +D VR+G + Q+F P+ + + A NN+A+GHYT
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 252
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAG 59
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 404 GAELVDSVLEVVRKEAESCDCLQG 475
G E+VD L+ +RK A++C LQG
Sbjct: 111 GKEIVDLCLDRIRKLADNCTGLQG 134
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 62.1 bits (144), Expect = 2e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+ VDLEP +D VR+G + Q+F P+ + + A NN+A+GHYT
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 43.2 bits (97), Expect = 9e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 252
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAG 59
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 404 GAELVDSVLEVVRKEAESCDCLQG 475
G E+VD L+ +RK A++C LQG
Sbjct: 111 GKEIVDLCLDRIRKLADNCTGLQG 134
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 62.1 bits (144), Expect = 2e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 252 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQSGAGNNWAKGHYT 401
++VPRA+ VDLEP +D VR+G + Q+F P+ + + A NN+A+GHYT
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 43.2 bits (97), Expect = 9e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 252
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAG 59
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 404 GAELVDSVLEVVRKEAESCDCLQG 475
G E+VD L+ +RK A++C LQG
Sbjct: 111 GKEIVDLCLDRIRKLADNCTGLQG 134
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 51.6 bits (118), Expect = 3e-07
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +3
Query: 249 RQYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFXQ--SGAGNNWAKGHY 398
+ Y+PRA+L+DLEP ++ +++G + ++ +N GAGNNWA G++
Sbjct: 58 QHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYH 109
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +1
Query: 85 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 243
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 51.6 bits (118), Expect = 3e-07
Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Frame = +3
Query: 249 RQYVPRAILVDLEPGTMDSVRSGPFGQIFRPDN-FVFXQ-SGAGNNWAKGHY 398
+ Y+PRA+L+DLEP ++ +++G + ++ +N FV GAGNNWA G++
Sbjct: 58 QHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYH 109
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +1
Query: 85 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 243
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 171
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2
Query: 413 LVDSVLEVVRKEAESCDCLQ 472
+++SV VVRKEAE+C+CLQ
Sbjct: 1 MINSV-GVVRKEAENCNCLQ 19
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 437 RLLKLNRRAQHPRVVSLGPVVAGAGLSED 351
R KLN+R P LGP ++G G D
Sbjct: 390 RFGKLNKRISFPETFDLGPYMSGGGEGSD 418
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 88 EIVHIQAGQCGNQIGAKFWEIISD 159
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = -1
Query: 240 FIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAAL------TSLDMYDFPHF 79
F++V+ L Q V +GT GV+ + D+LP S D VA L + +YD H
Sbjct: 24 FLLVF-SILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATLLKSAKIRNTRIYDADHS 80
Query: 78 VL 73
VL
Sbjct: 81 VL 82
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 103 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 195
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar to
COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis thaliana]
GI:3327870
Length = 1163
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = -2
Query: 443 FERLLKLNRRAQHPRVVSLGPVVAGAGLSEDEVVRTEDLSERS----RAXRVHGAGLQVD 276
F+RLLK R+++ + + V +DEV D ++RS R R+ +
Sbjct: 1053 FKRLLKFGRKSRGAESLMMDWVSVTTSEGDDEVEDRRDFADRSSEDLRKSRMGSLQNHLS 1112
Query: 275 EDGAGHVLPPE 243
EDG PE
Sbjct: 1113 EDGFNESEFPE 1123
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 182 PVGSMPCSSEMISQNLAPIW 123
PVG C SE ++Q L +W
Sbjct: 655 PVGKEVCDSERVTQGLGAVW 674
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,649
Number of Sequences: 28952
Number of extensions: 184346
Number of successful extensions: 589
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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