Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00381
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 53 3e-08
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 34 0.017
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 31 0.12
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 31 0.21
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 28 1.1
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 27 2.6
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 26 4.6
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 8.0
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = +3
Query: 273 GQRVDYIIKDSKGHILSQKDTVTKGK-FSFVTENYDMFEVCFISKVPSERRGIPHQ---V 440
GQ + +I DS G+ S V K +F + M ++CF++ + H+ V
Sbjct: 60 GQTLSMMITDSSGNTHSSIQNVLGEKSVAFDVDASAMLDICFLNTLTPGAIESEHKKRSV 119
Query: 441 SLDIKIGIEAKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNEST 620
L+ +G +A Y + +A L + + R + + E I ++ RE R+TNEST
Sbjct: 120 KLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNEST 179
Query: 621 NNRVLFFSIFSMACLWV 671
N RV F+ + L+V
Sbjct: 180 NERVKNFAYLTFISLFV 196
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 540 TYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACLWV 671
T E+I+ + L R RE RDT+ES N+RV+ ++I + L V
Sbjct: 153 TRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVVLLV 196
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 TEIQGQRVDYIIKDSKGHILSQKDTVT-KGKFSFVTENYDMFEVCFISKVPSERRGI 428
T ++GQ++ YI+ D+ G++ ++ K K+S V E + FI+ + S G+
Sbjct: 259 TPLKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 509 PMEVELKRLEDLFRSYRSRFHTNEEKRRRN 598
P+EV KR+ LFR+ +RF +EK R N
Sbjct: 11 PIEVRRKRIVPLFRANHTRFRPVDEKNRIN 40
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 491 GGCKIEPMEVELKRLEDLFRSYRSRFHTNEEKRRRNERYQ*INE 622
GG I P E E E L R Y ++H E+ YQ I+E
Sbjct: 396 GGLGIPP-ETEASHFEHLLRPYMEKYHMTLEEFTHAYNYQQIHE 438
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 526 QFHFHWFNFAASPIPS 479
QFHFH +++ +PIPS
Sbjct: 88 QFHFHCYDYYYTPIPS 103
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 4.6
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = +3
Query: 261 TEIQG-QRVDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISK-VPSERRGIPH 434
T + G Q V I + G I+ Q+ + ++SF +N + CF + + E + +
Sbjct: 50 TNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLF 109
Query: 435 QVSLDIKIGIEAKTYEG--IGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDT 608
V I I E +G+ +L+ T S+ + + RE R+T
Sbjct: 110 NVHGVIYISDEDLDANNPLLGKVRQLHD---------TISK-VKHEQEYFVARERIHRNT 159
Query: 609 NESTNNRVLFFSIFSMACL 665
ESTN+RV ++SI L
Sbjct: 160 AESTNDRVKWWSILQTVIL 178
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 204 QVFERRITRQRVSCRRIDV-----TEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFVTE 368
+ F +R+ ++++ RI+V T I+ Q + KD+ + QK ++ + ++ +
Sbjct: 394 EAFLKRLESKKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLRSIYLQK 453
Query: 369 NYDMFEVCFISKVPSE 416
+ D+F+ + K+P E
Sbjct: 454 DKDVFQ---LDKLPVE 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,024
Number of Sequences: 5004
Number of extensions: 59034
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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