Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00381
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 66 3e-11
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 64 1e-10
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 52 4e-07
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 48 7e-06
06_01_0751 + 5630036-5630233,5630623-5630718,5631420-5631629,563... 47 2e-05
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 38 0.010
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 31 0.67
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 29 2.7
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333... 29 3.6
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 29 4.8
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 28 8.3
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 66.1 bits (154), Expect = 3e-11
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +3
Query: 309 GHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGI 488
G+ L + T G+F+F T + CF + S +G ++LD KIGI AK ++ I
Sbjct: 81 GNTLHHNENATVGQFAFTTSEAGNYLACFW--IDSAEKGSGISINLDWKIGIAAKDWDVI 138
Query: 489 GEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMA-CL 665
+ K+ + R + ++I Q+ ++ RE EMR +E TN RV +FSI S++ C+
Sbjct: 139 AKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSVCI 198
Query: 666 WV 671
V
Sbjct: 199 VV 200
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 309 GHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGI 488
G I+ K V+ G+FSF T + CF + ++R + +++LD ++GI K ++ +
Sbjct: 125 GDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRNKRLVV--KLNLDWRVGIATKDWDSV 182
Query: 489 GEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSM-ACL 665
+ KL + +T +AI ++ L+R +E MRDT+E TN R + SI S+ C+
Sbjct: 183 AKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATWLSIISLIVCI 242
Query: 666 WV 671
V
Sbjct: 243 IV 244
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 148 SLIWH---GTDAIMWSLAPNTHKCLKEELHANVLVAGE 252
+L+W G A+ + P+ KC+ EE+ +NV+V G+
Sbjct: 16 ALLWWMAAGAGAVWLEIPPSATKCVSEEIQSNVVVIGD 53
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Frame = +3
Query: 270 QGQRVDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLD 449
+ RV + G+ L + V G F+F + CF + P R D
Sbjct: 82 ESHRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWA--PDHRPTATVGFEFD 139
Query: 450 IKIGIEAKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNR 629
+ G+ A+ + + + +++ + + + +I ++ +R REEEM++ N TN+R
Sbjct: 140 WRSGVSARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSR 199
Query: 630 VLFFSIFSMA-CLWV 671
+ + FS+A CL V
Sbjct: 200 MAWLGFFSLAICLSV 214
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +3
Query: 279 RVDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKI 458
R+ + G+ + + V G F+F + CF + P + + D +
Sbjct: 83 RISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACFWA--PDHKPPVSIGFEFDWRS 140
Query: 459 GIEAKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLF 638
G+ AK + + + +++ + + + ++I ++ +R+REEEM++ N+ TN+R+ +
Sbjct: 141 GVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAW 200
Query: 639 FSIFSMA-CLWV 671
S+ CL V
Sbjct: 201 LGFLSLGICLSV 212
>06_01_0751 +
5630036-5630233,5630623-5630718,5631420-5631629,
5631735-5631811,5632204-5632222,5632304-5632348
Length = 214
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/98 (27%), Positives = 48/98 (48%)
Frame = +3
Query: 309 GHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGI 488
G+ + + T G+F+F T + CF P + G+ ++LD KIGI AK ++ +
Sbjct: 104 GNTVHHNENATTGQFAFTTSEAGNYLACFWLDSPEKGSGV--SLNLDWKIGIAAKDWDTV 161
Query: 489 GEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMR 602
+ K+ + R + E+I + ++ RE EMR
Sbjct: 162 AKKEKIEGVELELRKLEAAVESIHHNLLYLKAREAEMR 199
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 124 VQYLVLLLSLIWHG--TDAIMWSLAPNTHKCLKEELHANVLVAGE 252
V +V++++L+ G +A+ L P KC+ EE+ NV+V +
Sbjct: 4 VAAMVVVVALLLGGGAVEAVWLDLPPTGTKCVSEEIQPNVVVLAD 48
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 37.5 bits (83), Expect = 0.010
Identities = 29/122 (23%), Positives = 50/122 (40%)
Frame = +3
Query: 282 VDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIG 461
+D + G+ + + KF F M++ CF + G P VS I +G
Sbjct: 65 IDLTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPY-----GAPETVSFYIHVG 119
Query: 462 IEAKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFF 641
+ + L+ + K E++ + ++ RE R TNEST RV+F+
Sbjct: 120 -HIPNEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFY 178
Query: 642 SI 647
+I
Sbjct: 179 TI 180
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 282 VDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVP 410
VD ++KD G + T KF F+ + + CF +K P
Sbjct: 67 VDLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSP 109
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -1
Query: 500 CSLPDPFISLCFYADFNI*AYLMWNTSSF*WYFRYKANFKHIIIL 366
C + S Y+ FN+ + L W + S W+ +N+++I++L
Sbjct: 650 CCFEEDCSSRAIYSGFNLSSSLDWQSYSKRWWMGELSNYEYILVL 694
>01_07_0226 +
42130300-42131430,42131530-42131715,42133244-42133345,
42133425-42133481,42133563-42133658,42133736-42133828,
42133945-42134064,42134155-42134187,42134266-42134316,
42135129-42135191
Length = 643
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 339 TKGKFSFVTENYDMFEVCFISKVPSE 416
T+G+F + ENYD++ C VP +
Sbjct: 585 TRGRFRSMKENYDLYVACIDETVPEK 610
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 282 VDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVP 410
VD +++D G+ + KF F+ + CF +K P
Sbjct: 66 VDLVVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFCFTNKSP 108
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 225 TRQRVSCRRIDVTEIQGQRVDYIIKDSKGHI 317
TR R+ + + EIQ VDY+I DS G I
Sbjct: 852 TRPRIMDHVVTLEEIQKHFVDYMINDSLGAI 882
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,833
Number of Sequences: 37544
Number of extensions: 357808
Number of successful extensions: 756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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