Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00381
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   2e-23
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)            54   9e-08
SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_31140| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_50021| Best HMM Match : rve (HMM E-Value=0.043)                     28   6.4  
SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)            28   8.5  

>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score =  106 bits (254), Expect = 2e-23
 Identities = 51/112 (45%), Positives = 74/112 (66%)
 Frame = +3

Query: 276 QRVDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIK 455
           Q+ +  + DS GH+  ++D  TKGKF+F T++YDM+EVCF S+  S   G   +VS++IK
Sbjct: 115 QKTNLKVTDSTGHVFYKRDDATKGKFAFTTDDYDMYEVCFDSET-SHGGGSDREVSINIK 173

Query: 456 IGIEAKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTN 611
            G+EAK YE + +A KL   +   +  +   +AIV DF  MR+RE+EMRDTN
Sbjct: 174 HGVEAKNYEDLAKAEKLKPMEVELKRLEDLGDAIVNDFAYMRQREQEMRDTN 225



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +3

Query: 426 IPHQVSLDIKIGIEAKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRD 605
           +  +VS++IK G EAK Y+ + +A KL   K   R  +  ++ IV  F   R+REEE R+
Sbjct: 232 VRREVSINIKHGTEAKAYQNLAQAEKLKPIKLAMRRLEDMADEIVSSFAYFREREEEQRN 291

Query: 606 TN 611
           TN
Sbjct: 292 TN 293



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 172 AIMWSLAPNTHKCLKEELHANVLVAGE 252
           ++ ++L+    KCLKEE+H +VLV GE
Sbjct: 80  SLSFTLSSGNRKCLKEEVHKDVLVTGE 106



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 315 ILSQKDTVTKGKFSFVTENYDMFEVCF 395
           +L  K+  TKGKF+F  +    F++CF
Sbjct: 317 LLFTKENATKGKFAFTFDRDGHFDLCF 343


>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
 Frame = +3

Query: 294 IKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVP--SERRGIPHQVSLDIKIGIE 467
           +KD  G I+  K   ++G+F+F +       +C  S     S   G   ++ LDI++G  
Sbjct: 202 VKDPNGKIIMSKYYSSEGRFTFTSHTPGEHVICLHSNSTRWSLWAGGRLRIHLDIQVGEH 261

Query: 468 AKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSI 647
           A  Y  I    KL + +   R      E I ++    R REE  R T+ESTN RVL++++
Sbjct: 262 ANDYAQIAAKDKLTELQLRIRQLLDQVEQISKEQNYQRFREERFRMTSESTNQRVLWWAL 321


>SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/109 (23%), Positives = 48/109 (44%)
 Frame = +3

Query: 339 TKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLNQWK 518
           T GK++F       +  CF +K+ +    +  + S+DI    +  + E      KL++  
Sbjct: 34  TSGKYTFAAHMDGTYNYCFSNKMSTMTPKV-LKFSMDIGEAPKDTSKEDNAGHDKLSEMV 92

Query: 519 WN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACL 665
               +  T    +  +   M  RE   R  N++TN+RV+++S F    L
Sbjct: 93  SQLSEAMT---GVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVL 138


>SB_31140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 216 RRITRQRVSCRRIDVTEIQGQRVDYIIKDSKGHILSQKDTVTK 344
           + IT + +   R  V  +QG R+D I  D+ GH +S +   +K
Sbjct: 14  QHITVEELCRGRRSVDSMQGSRIDTIFTDAGGHYVSYRSGSSK 56


>SB_50021| Best HMM Match : rve (HMM E-Value=0.043)
          Length = 662

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 407 TIRKKRYSTSSKLRY*NRHRSKDL*RDRGGCKIEPMEVELK--RLEDLFRSYRSRFHTNE 580
           TI + +Y    +  Y +RH +K L R   G  +  ++ + K  +L+D+ RSYR    T  
Sbjct: 540 TIERLKYRQQVQKHYYDRH-TKPLPRFHTGQPVTVLDHKTKQWKLQDVPRSYRLTTATGG 598

Query: 581 EKRR 592
           E RR
Sbjct: 599 ELRR 602


>SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 497 CKIEPMEVELKRLEDLFRSYRSRFHTNEEKRRRNE 601
           C   P +V+ +  +DL     +  H N EKRR NE
Sbjct: 253 CHCHPRDVKHRLTDDLLWFAFTLIHNNAEKRRGNE 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,449,545
Number of Sequences: 59808
Number of extensions: 426548
Number of successful extensions: 895
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)