Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00381
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...   118   4e-27
AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    64   7e-11
AC199170-2|ABO33261.1|  167|Caenorhabditis elegans Hypothetical ...    38   0.007
AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...    33   0.20 
Z81483-1|CAB03963.1|  307|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   5.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   5.7  
AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical ...    28   5.7  

>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score =  118 bits (284), Expect = 4e-27
 Identities = 57/126 (45%), Positives = 84/126 (66%), Gaps = 2/126 (1%)
 Frame = +3

Query: 294 IKDSKGHILSQKDTVT--KGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIE 467
           + D++GH L +++     KGKF+F  + YD+FE+C  +  P+   G   +VSL +K G+E
Sbjct: 57  VTDTRGHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVE 116

Query: 468 AKTYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSI 647
           AK Y+ I +A KL   +   R  +  +++I +DF  MR+REEEMR+TNESTN+RVL+ SI
Sbjct: 117 AKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSI 176

Query: 648 FSMACL 665
           FSM CL
Sbjct: 177 FSMLCL 182



 Score = 35.1 bits (77), Expect = 0.049
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 133 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGE 252
           LV+ LS I     ++ + + P   KCLKEE+H NV+V GE
Sbjct: 4   LVIFLSAIVLA-HSLRFYVPPKEKKCLKEEIHKNVVVTGE 42


>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 37/124 (29%), Positives = 61/124 (49%)
 Frame = +3

Query: 294 IKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAK 473
           +KD +  ++  K    +G+F+F +       +C  S   +   G   +V LDI+ G  A+
Sbjct: 67  VKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQ 126

Query: 474 TYEGIGEAAKLNQWKWN*RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFS 653
            Y  I +  KLN+ +   R      + I ++    R REE  R T+ESTN+RV ++SI  
Sbjct: 127 DYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQ 186

Query: 654 MACL 665
           +  L
Sbjct: 187 VVVL 190


>AC199170-2|ABO33261.1|  167|Caenorhabditis elegans Hypothetical
           protein T08D2.1 protein.
          Length = 167

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +3

Query: 294 IKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAK 473
           +KD +  ++  K   ++G+F+F +       +C  S   +   G   +V LDI+ G  A+
Sbjct: 67  VKDPEDKVILSKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDIQAGDHAQ 126

Query: 474 TYEGIGEAAKLNQ 512
            Y  + E  KL++
Sbjct: 127 DYAQVEEERKLDE 139


>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 3/161 (1%)
 Frame = +3

Query: 177 YVELGAEHTQVFERRITRQRVSCRRIDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFS 356
           ++ + A   Q F  R+T         +V E     +D  I       + + +  + GKF+
Sbjct: 20  FIHVDANEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGPDNKEIYKGERESSGKFT 79

Query: 357 FVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIG---EAAKLNQWKWN* 527
           F      ++  CF +K+ +     P  V   ++I    +   G     +AA   + +   
Sbjct: 80  FAAHMDGVYTYCFGNKMSTMT---PKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMV 136

Query: 528 RD*KTYSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIF 650
           R+  +   ++  +   M  RE   R+ NE+TN+RV+ ++ F
Sbjct: 137 RELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAF 177


>Z81483-1|CAB03963.1|  307|Caenorhabditis elegans Hypothetical
           protein C43D7.2 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 467 SKDL*RDRGGCKIEPMEVELKRLEDLFRSYRSRFHTNE 580
           S DL R +   K  P+EVEL++L D  +S    FHTN+
Sbjct: 62  SIDLRRSKSLIKWNPLEVELRKLIDHIKSV---FHTNK 96


>AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical
           protein T11F8.2 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -1

Query: 293 NIVNSLPLY-FCHIYSPATNTLACNSSFKHLCVFGAKLHII---ASVPCQIKLSNNTRYC 126
           N++ +L  + F H   P    + CN  +K++C  G+  H+      V C    + +  Y 
Sbjct: 301 NVLTALVYFLFIHEMEPLCRNMQCNDGWKNVC--GSWFHMFLVPIGVLCVAMYAGDYTYV 358

Query: 125 TSMFIVVIYYL 93
              ++  +YY+
Sbjct: 359 LKDWVPALYYI 369


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 363  TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 485
            T+  D   +CFI +     + +  Q  +D+KIG +   +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 363  TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 485
            T+  D   +CFI +     + +  Q  +D+KIG +   +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253


>AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical
           protein T05G11.4 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = -2

Query: 268 ISVTSILLQLTRWRVILLSNTCVCSAPSST*SHQFHARLSSVTTRDIVPPCLLWLYIIYL 89
           I +  I++     R + LS++  CS+P+S+ +  F   LS  T R  V    +W  +I +
Sbjct: 2   ICIIVIIIPFFDLRYLSLSHSSGCSSPNSSLA-VFSGNLSLATAR-TVEQLSIWFGVI-M 58

Query: 88  AINKAEFITFMT 53
           AI +A  I F T
Sbjct: 59  AIIRALVIKFPT 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,418
Number of Sequences: 27780
Number of extensions: 329646
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)