Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00381
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 128 CTSMFIVVIYYLSC 87
           C S+  + +YY+SC
Sbjct: 178 CISILAIKVYYISC 191


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 531 D*KTYSEAIVQDFTLMRKREEEMRDTNEST--NNRVLFFSIFSMACLWVW 674
           D KT  E       + R R ++   ++ S    N V+FF++ +   +W W
Sbjct: 411 DKKTAEENTDYFMPIGRPRAKDYGHSSGSVIDRNGVMFFNMVTRDSVWCW 460


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/48 (18%), Positives = 19/48 (39%)
 Frame = -1

Query: 233 LACNSSFKHLCVFGAKLHIIASVPCQIKLSNNTRYCTSMFIVVIYYLS 90
           L C +S   LC      ++  + P        ++    + IV ++ L+
Sbjct: 120 LLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKRLAGLMIVAVWVLA 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,118
Number of Sequences: 438
Number of extensions: 3878
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)