Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00380
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 28 1.1
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 28 1.4
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.3
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 27 3.3
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 27 3.3
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 27 3.3
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 27 3.3
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 4.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 26 4.4
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 4.4
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 5.8
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni... 25 7.7
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 7.7
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 303 IVTCYHTVF*--LSNGFNRVSATSAIGET*WLWWNSGIASTISKLWFL 166
+ +C+ F ++ G ++ +S + WL+ G+ S IS LW L
Sbjct: 175 VCSCFSGAFGGLIATGLTKIPKSSGLPNWGWLYIIEGLISAISALWIL 222
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 98 AKYPHCAVNGVLLADA--GKTKEGGRNQSLDIVDAIPLFHHSHYVSPMAEVALTRLKPLL 271
AKY H AD+ +++ + SL + P F +VSP+ + + L+P L
Sbjct: 127 AKYSHPGAPTATSADSISMESRPSNLSTSLSKTTSYPQFQVRQFVSPIISIDNSALEPFL 186
Query: 272 NQ 277
N+
Sbjct: 187 NR 188
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 157 LSLSGISKKHTIHSTVWILSGVQYY-FSVGSGFN 59
+SLS KH HS + +SG+ Y+ SVG+G +
Sbjct: 175 ISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLS 208
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 644 CSPLVSLCPGWSNPGSDHRGNC-QSPQDHALHLFEEDARQ 528
C L++LCP S+P S +C +S + + ++ + D+RQ
Sbjct: 340 CFRLIALCPNVSSPLSFEDFDCLESNIEFSFNVLDPDSRQ 379
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 625 YALVGPILALIIEVIVKVHKITLYTFLKKMRDSLEDVW 512
YA+ I+ L+IEV + L +L+K D + D+W
Sbjct: 206 YAVRTSIVRLLIEVEMHEEAHQLLVYLQKEDDQILDIW 243
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +1
Query: 220 LRLTNGRSSTHTIETIAQSENRVIA--GYYAACENFRDNIVERCPGLKIAEKIVEYFPSA 393
LRL + R S T V A G A C N IV PG EK++E P+
Sbjct: 18 LRLLSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSLEIVNYIPGSVGIEKLIEAVPAI 77
Query: 394 VFIVVDNKKMVQHLDS 441
I N V ++ S
Sbjct: 78 KAIANINGVQVTNMGS 93
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +1
Query: 220 LRLTNGRSSTHTIETIAQSENRVIA--GYYAACENFRDNIVERCPGLKIAEKIVEYFPSA 393
LRL + R S T V A G A C N IV PG EK++E P+
Sbjct: 18 LRLLSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSLEIVNYIPGSVGIEKLIEAVPAI 77
Query: 394 VFIVVDNKKMVQHLDS 441
I N V ++ S
Sbjct: 78 KAIANINGVQVTNMGS 93
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 188 RYLNFGSCHLP*SFRHQ 138
R FGSCH+P S RH+
Sbjct: 1038 RAKGFGSCHVPNSLRHK 1054
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 467 QMANGDQG-IFNCFPSPYVLETVSHLLQ-KGVERDLVDF 577
++ +G+ G IF C +PYV T LL+ K E + +DF
Sbjct: 213 RLRHGNDGLIFTCTETPYVSGTDQSLLKWKPKEMNTIDF 251
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 238 RSSTHTIETIAQSENRVIAGYYAACENFRDNIVERCPGLK 357
+++TH+ ++QS ++ A +FR + E+ PGL+
Sbjct: 345 KNNTHSNRVLSQSSGPIVRPSLLAALDFRSSNEEQHPGLR 384
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 355 KIAEKIVEYFPSAVFIVVDNKKMVQHLDSPAIK 453
KIA + EY KK++Q LDSPA+K
Sbjct: 66 KIASPVAEYVEKTT---PGEKKVLQDLDSPALK 95
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 17 TALVSNNHKMSEVSIETGAYAKIILHAAKYPHCAVNGVLLA-DAGKTK-EGGRNQSLDIV 190
T SN + VS A + +L ++ P +NG L + D+ T + RN D
Sbjct: 115 TEATSNERPFNPVS---AANLERLLMSSTGPQTPINGELKSNDSQDTAFQSSRNMPSDTS 171
Query: 191 DAIPLFHHSHYVSPMA 238
A P + HS SP+A
Sbjct: 172 VASPDYSHSQSSSPIA 187
>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/61 (21%), Positives = 24/61 (39%)
Frame = +1
Query: 202 TIPPQPLRLTNGRSSTHTIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEY 381
T+ P RL R+ +ET+ SEN + N + G + +++ Y
Sbjct: 78 TVAPNSRRLGLARTMMDYLETVGNSENAFFVDLFVRASNALAIDFYKGLGYSVYRRVIGY 137
Query: 382 F 384
+
Sbjct: 138 Y 138
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 351 PWTSFNNIITEVLAGCIVTC 292
P S NII +VLAGC C
Sbjct: 70 PNYSLRNIIWDVLAGCSTAC 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,534
Number of Sequences: 5004
Number of extensions: 55109
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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