Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00380
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418...    52   6e-07
03_02_0627 + 9951391-9951523,9951615-9951684,9951829-9951856,995...    29   2.6  
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414...    28   7.9  
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807...    28   7.9  
03_05_0041 - 20169308-20169317,20169485-20170491                       28   7.9  
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490...    28   7.9  

>04_03_0108 -
           11340504-11340680,11341580-11341665,11341784-11341827,
           11342339-11342428,11343762-11343928,11343986-11344010,
           11344636-11344797,11345376-11345422,11345926-11345985,
           11346094-11346465
          Length = 409

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
 Frame = +2

Query: 71  AYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQS--LDIVDAIPLFHHSHYVS--PMA 238
           AY K+ LHA K+P  AVNG+L+   G+  +G  + +  + I DA+PL HH H++   P  
Sbjct: 13  AYVKLALHALKHPAAAVNGLLV---GRLLDGAASPAAVVSIADAVPLSHHPHHLPLLPTL 69

Query: 239 EVALT 253
           E+ALT
Sbjct: 70  ELALT 74



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 IETIAQSENRVIAGYYAACENFRDNIVERCPGLK-IAEKIVEYFPSAVFIVVDNKKM 423
           +E    ++   + GYY A  N R +  +  P  K + + +   FP A  +++DNKK+
Sbjct: 76  VEDHFAAQGLAVVGYYHA--NARRDDADLPPVAKRVGDHVFRNFPRAAVLLLDNKKL 130


>03_02_0627 +
           9951391-9951523,9951615-9951684,9951829-9951856,
           9952208-9952254,9952366-9952456,9952738-9952915,
           9953626-9953713,9953788-9953869,9954195-9954270,
           9954429-9954496,9954623-9954692,9955469-9955553,
           9955671-9955764,9956289-9956372
          Length = 397

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 8   RVLTALVSNNHKMSEVSIETGAYAKIILHAAKYPHCAVNGVLLADAGKTK 157
           RVL  L  +NH + +V I +G   +I +H A   H  V+  L    G+ K
Sbjct: 273 RVLERLKIHNHTLIQVEIHSGRPHQIRIHLAYIGHPLVDDPLYGIGGQPK 322


>04_04_1016 -
           30139691-30139951,30140066-30140134,30141267-30141470,
           30141552-30141808,30141899-30141983,30142080-30142164,
           30142269-30142795
          Length = 495

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 542 LQKGVERDLVDFDNYLDDQSQDWTNQGIEKLVASINASTLDDDEKG 679
           ++  +E    DFD Y+D Q Q + +  IE L   + A+  DD ++G
Sbjct: 217 IKASIEARKPDFDAYIDPQKQ-YADAVIEVLPTRLIAAADDDGDEG 261


>04_04_1009 -
           30078988-30079248,30079363-30079431,30080564-30080767,
           30080849-30081105,30081196-30081280,30081377-30081461,
           30081566-30082092
          Length = 495

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 542 LQKGVERDLVDFDNYLDDQSQDWTNQGIEKLVASINASTLDDDEKG 679
           ++  +E    DFD Y+D Q Q + +  IE L   + A+  DD ++G
Sbjct: 217 IKASIEARKPDFDAYIDPQKQ-YADAVIEVLPTRLIAAADDDGDEG 261


>03_05_0041 - 20169308-20169317,20169485-20170491
          Length = 338

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 631 FLYALVGPILALIIEVIVKVHKITLYTF 548
           FLY LVG ++A++  ++V+V  + +  F
Sbjct: 272 FLYTLVGLMIAMVTHLLVRVESLQIQRF 299


>03_02_0010 +
           4903473-4903525,4904117-4904175,4904285-4904355,
           4904469-4904585,4907001-4907024,4907055-4907117,
           4907303-4907407,4907552-4907602,4907702-4908535
          Length = 458

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 68  GAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIP 202
           G    I +    +P    NGV++   GK  +GGR   ++ +   P
Sbjct: 168 GPNVTIAVQDPTFPGYVDNGVIMGQTGKADDGGRYAGIEYMRCAP 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,782
Number of Sequences: 37544
Number of extensions: 356593
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)