Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00380
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   6e-12
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               29   2.7  
SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)                      29   3.5  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    28   6.1  
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)                   28   8.1  

>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 35/67 (52%), Positives = 48/67 (71%)
 Frame = +2

Query: 59  IETGAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSPMA 238
           I   AYAK++LHA+KYPH AVNGVLL +   T +G     L ++DA+PLFHH   ++P+ 
Sbjct: 5   ISARAYAKMLLHASKYPHKAVNGVLLGEE-VTHDG----ELYVLDAVPLFHHCLGLAPLL 59

Query: 239 EVALTRL 259
           EVALT++
Sbjct: 60  EVALTQV 66



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 256 IETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAVFIVVDNKKMVQHL 435
           +++  ++    I GYY A E+  +N  +     KI EKI +   +   +++DN KM    
Sbjct: 66  VDSYCKTLGHHIIGYYQANEHIENNSPDNI-AYKIGEKIADQCSNGFILMIDNSKMSISC 124

Query: 436 DSPAIKVHK 462
           D  A KV K
Sbjct: 125 DEVACKVIK 133


>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1485

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 5   TRVLTALVSNNHKMSEVSIETGAYAKIILHAAKYPHCAVNGVLLADAGKTKEG 163
           TR    L+SNN+K++E ++  GAY   +++A      AVN   LA+ G  + G
Sbjct: 319 TRFRDVLISNNNKVTETTLTFGAY---LVNAMLLYTYAVNKT-LAEGGDYRNG 367


>SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)
          Length = 145

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 295 GYYAACENFRDNIVERCPGLKIAEK 369
           G+Y AC++   +IVERCP +  + K
Sbjct: 80  GFYTACKDVCRSIVERCPSVFSSRK 104


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 638  PLVSLCPGWSNPGSDHRGNCQSPQ 567
            PL SL P  SNPGS   GN + P+
Sbjct: 1068 PLFSLTPEQSNPGSTIEGNKEYPK 1091


>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
          Length = 534

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 506 PSPYVLETVSHLLQKGVERDLVDFDNYLDDQSQDWTNQGIEKLVASINASTLDDD 670
           PS  ++E V HL Q   E   +     L +++ DW N   E++  +   S  DDD
Sbjct: 72  PSDLLVELVQHLQQVAKESLGMAMVFTLINEAHDWLNSNAERI--TCQKSVTDDD 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,659,236
Number of Sequences: 59808
Number of extensions: 424556
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)