Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00380
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-4|CAB02093.1|  196|Caenorhabditis elegans Hypothetical pr...    35   0.062
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    31   0.58 
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    31   0.58 
U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical p...    27   9.4  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    27   9.4  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    27   9.4  

>Z79754-4|CAB02093.1|  196|Caenorhabditis elegans Hypothetical
           protein F25H2.4 protein.
          Length = 196

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 59  IETGA--YAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSP 232
           +ET A  Y+ IILH  KYP   V G+L+ +    K+G +   + +   +PL H S  ++P
Sbjct: 5   VETQALPYSTIILHCLKYPAKGVFGLLIGN----KKGDK---VTVTSCVPLCHESTPLAP 57

Query: 233 MAEVA 247
             E+A
Sbjct: 58  PLELA 62



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 503 FPSPYVLETVSHLLQKGVERDLVDFDNYLDDQSQDWTNQGI-EKLV 637
           F     L  +  ++QK + R+L DF+N+LD+   D+ N  +  KLV
Sbjct: 144 FQGSNFLRGLQAVIQKKLYRELSDFENHLDNPEFDFYNTNLSNKLV 189


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 306 CIVTCYHTVF*--LSNGFNRVSATSAIGET*WLWWNSGIASTISKLWFLPPSLV 151
           C+V  Y+ VF   LSNG   ++   A     W+W+N+     + KL+FL  SLV
Sbjct: 88  CVVASYYGVFFNLLSNGLLSLNRFCAT----WVWYNTYFDKPLIKLYFLIISLV 137


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 220 LRLTNGRSSTHTIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFPSAV 396
           L  T   ++    E   + E  +   YYA  +   D I++   G +I EKI +YFP  V
Sbjct: 256 LGTTGALATLQKFEETTKPEVPIDHEYYAQRKEITDMILKAARGAEIHEKIEKYFPGLV 314


>U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical
           protein C05E11.7 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 199 TTIPPQPLRLTNGRSSTHTIETIAQSENRVI 291
           T IPPQP+++T   S+TH   T+  +   ++
Sbjct: 413 TMIPPQPVKITYRPSTTHAKSTMMTTTQPIV 443


>Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 172 VPATFLSLSGISKKHTIHSTVWILSGVQYYFSV 74
           +  T+  L  IS +  + + +W+L    YY SV
Sbjct: 280 IDKTYSCLRNISAQEVLDAQLWVLQNTTYYISV 312


>Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 172 VPATFLSLSGISKKHTIHSTVWILSGVQYYFSV 74
           +  T+  L  IS +  + + +W+L    YY SV
Sbjct: 280 IDKTYSCLRNISAQEVLDAQLWVLQNTTYYISV 312


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 373 VEYFPSAVFIVVDNKKMVQHLDSPAIKVHKYSDG 474
           V++ PS+V+++VD  K  + L +   ++H   DG
Sbjct: 869 VDFTPSSVYLLVDLMKKNRRLGAACGRIHPRGDG 902


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 373 VEYFPSAVFIVVDNKKMVQHLDSPAIKVHKYSDG 474
           V++ PS+V+++VD  K  + L +   ++H   DG
Sbjct: 869 VDFTPSSVYLLVDLMKKNRRLGAACGRIHPRGDG 902


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393,702
Number of Sequences: 27780
Number of extensions: 316402
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)