Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00380
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665...    44   7e-05
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    31   0.94 
At2g01290.1 68415.m00043 expressed protein                             29   3.8  
At3g10580.1 68416.m01271 myb family transcription factor contain...    28   6.6  
At2g46225.1 68415.m05748 expressed protein                             27   8.8  

>At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665:
           Uncharacterised protein family (UPF0172)
          Length = 208

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/68 (32%), Positives = 39/68 (57%)
 Frame = +2

Query: 59  IETGAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSPMA 238
           I   AY K++LH+ ++   AVNGVL+       +G     ++I D++PLFH +  + P  
Sbjct: 13  ISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDG----VVEISDSVPLFHSNLALLPPL 68

Query: 239 EVALTRLK 262
           E++L  ++
Sbjct: 69  EISLIMIE 76



 Score = 35.1 bits (77), Expect = 0.044
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 289 IAGYYAACENFRDNIVERCPGLK-IAEKIVEYFPSAVFIVVDNKKM 423
           I GY+ A E F D  VE C   K I + I  YFP A  ++++NKK+
Sbjct: 86  IVGYFHANERFDD--VELCGVAKNIGDHISRYFPQAPILLLNNKKL 129



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 461 NIQMANGDQGIFNCFPSPYVLETVSHLLQKGVERDLVDFDNYLDDQSQDWTNQGI 625
           N ++   D G       P     +S  +     +D+ D D++LDD ++DW N G+
Sbjct: 152 NWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVDDHLDDVTKDWLNPGL 206


>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 503 FPSPYVLETVSHLLQKGVERDLVDFDNYLDDQSQDWTNQGIEK 631
           F   ++ E V H ++  V     DF  YL+D    WTN+ I K
Sbjct: 124 FYKNFIQELVKHGIEPHVTLHHYDFPQYLEDDYGGWTNRKIIK 166


>At2g01290.1 68415.m00043 expressed protein
          Length = 265

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 328 NIVERCPGLKIAEKIVEYFPSAVFIVVDNKKMVQHL 435
           N+V+   G  + EK++E       ++VD+ KMV+H+
Sbjct: 125 NLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHI 160


>At3g10580.1 68416.m01271 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain;
           similar to transcription factor MYBS1 (GI:24850303)
           [Oryza sativa (japonica cultivar-group)]; similar to
           I-box binding factor (GI:6688529) [Lycopersicon
           esculentum]
          Length = 287

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 531 TVSRTYGDGKQLKIPWSP 478
           T S+T G GK+  IPWSP
Sbjct: 82  TKSKTQGTGKKKGIPWSP 99


>At2g46225.1 68415.m05748 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 155 KEGGRNQSLDIVDAIPLFHHSHYVSPMAEVALTRLKPLLNQKT 283
           KEG R Q L  V  IPL HH HY+ P +        PL    T
Sbjct: 120 KEGLRQQQLLAV--IPL-HHKHYILPNSVNKRVHFSPLRRTDT 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,222
Number of Sequences: 28952
Number of extensions: 293040
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)