Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00379
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    25   0.84 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.5  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
 Frame = +2

Query: 521 EDECKSGRKKLLVDYFHTNLHTQNFYAFRFFICEVL-------NFINVVRQI-----FFM 664
           E + K+  KK  VD   T     N Y FR    E+L       +F +V+R I     FFM
Sbjct: 163 EIDVKTAMKKYSVDIISTCAFGINTYCFRNDNSEILKMATQLVDFKSVIRSISVFSFFFM 222

Query: 665 DFFLDGEFQLMAVTWSAS 718
             F+D  F+L  V  +AS
Sbjct: 223 PSFVD-IFRLTFVDKTAS 239


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 10  PTRGRSARPYSRPRPTRRAPAMFDV 84
           PTR +S +    P P +R+P++ D+
Sbjct: 685 PTRDKSKQNEKSPSPQQRSPSVTDL 709


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 125 HTESSLRSPFTEPKTSNMAGARRVGRGREY 36
           HT  +   P+    T    G  R+ RGR+Y
Sbjct: 321 HTTVNEAQPYVRNTTVPTQGVARMSRGRQY 350


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 125 HTESSLRSPFTEPKTSNMAGARRVGRGREY 36
           HT  +   P+    T    G  R+ RGR+Y
Sbjct: 269 HTTVNEAQPYVRNTTVPTQGVARMSRGRQY 298


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 29  HVRTHDRDRRAARPPC 76
           H+RTH  ++R A P C
Sbjct: 365 HLRTHTGEKRFACPIC 380


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,714
Number of Sequences: 336
Number of extensions: 4170
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)