Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00379
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   2.1  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   3.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   3.7  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   4.9  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.5  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   8.6  

>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 575 SCGNSRQVAFYDPTCTRL---QRWDIKIQDQHLDAASFPRFPQVAGNIKQDCLK 423
           S GN ++ A Y P CT+L   ++ D+ +Q   + +AS       +G++  D L+
Sbjct: 762 SAGNKKEAAKYIPRCTQLTTQEKVDMWVQVGDVKSASEEAAKSKSGSVLGDLLE 815


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 456 LWKTWEGGRIKMLVLDLNVPSLKTSASRVVKSYLSTISTR 575
           L+KT +   +   V+++N   LKTS +   K  LST  T+
Sbjct: 196 LFKTLKRHGLVQGVMEMNTKPLKTSKTTPTKKMLSTTDTK 235


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 411 FVLFFQAILFYVPRYLWKTWEGGRIKMLVLDLNVPSL 521
           F+L    +L  +  +L K W   ++  LV  L+ PSL
Sbjct: 462 FLLALSILLSIISSFLVKHWRESKVPFLVYFLSAPSL 498


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 512 PIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFFICEVLNFINVVRQIFFMDFFLDG 682
           PI      +  + L    FH    T       FF+ +  NF+ V R  F  DF L G
Sbjct: 156 PIFSKRKYNDTENLYEQPFHLEFDTCQELLSLFFLKQYHNFMFVFRDYFIRDFELGG 212


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
 Frame = +1

Query: 184 FSLLVTSRQYI-GDPIDCIVDEIPLP--LWTRTAGYTLLSPSRTDLSAASER--ITCNPA 348
           F+L +T+  +I  D I+  +D IP P       +  +  S +   LSA S+   +TC   
Sbjct: 175 FNLYLTNSPHIMNDIINKDIDNIPKPGSELIELSRDSYNSQATFCLSAESQERYVTCVIP 234

Query: 349 SAHMSKDKTKLNITNIISGFV 411
           S H+ +   +++I+N+I+ F+
Sbjct: 235 SIHIPECVGEVSISNLINTFI 255


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 518  VEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 613
            V +E KS  K LL    +T LH   +Y F FF
Sbjct: 1283 VIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 402 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 497
           WV   L+F+AI+  VP     L+ T +GG++++ V
Sbjct: 51  WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 419 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 505
           I S NP L S     N+ RR   D GP S
Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,541
Number of Sequences: 5004
Number of extensions: 68117
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)