Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00379
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 31 0.97
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495... 30 2.2
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890 29 5.2
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092... 28 6.8
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 28 6.8
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 28 9.0
03_01_0282 + 2181598-2183124 28 9.0
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 28 9.0
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 31.1 bits (67), Expect = 0.97
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -3
Query: 383 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVRVHNGSGISSTMQSIGSPMY 210
+ FVLS + AD L V + D SVR G+ R+Y A+ +G +S M + Y
Sbjct: 33 WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSNWWY 92
Query: 209 CRDVT--RSENAIKIITV 162
+T R +A+ TV
Sbjct: 93 DMSITNFRINDALNRFTV 110
>09_02_0146 +
4953007-4953297,4954105-4954341,4954592-4954669,
4954991-4955167,4955705-4955761,4955988-4956174,
4956910-4957055,4957213-4957395,4957860-4957970,
4959386-4959505,4959596-4959740,4960001-4960164,
4960816-4960902,4961062-4961390,4963426-4963507,
4963616-4963746,4963976-4964225,4965112-4965393,
4966780-4966986
Length = 1087
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 414 VLFFQAILFYVPRYLWKTWEGGRIKMLVLDLNVPSLKTSASRVVKSYLSTI 566
+L+ AIL + W++WE G M+V SL + +++K+ S I
Sbjct: 757 ILYVAAILHVFIKRRWQSWEDGTQSMIVRHFLTLSLPFQSLKIIKNNPSII 807
>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
Length = 595
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 380 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 282
N LSFD W D LH+++ D R+ SRV
Sbjct: 12 NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45
>03_03_0021 +
13808274-13808384,13809036-13809200,13809249-13809278,
13809279-13809397,13809696-13809770,13812071-13812146,
13813224-13813289,13813364-13813462,13814072-13814174,
13814338-13814411
Length = 305
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 608 IGKRKSFECASSCGNSRQVAFYDPTCTRLQRWDIKIQDQHLDAASFPR 465
+G K+ + A +CGN + PT T+++ D+ ++ + AAS R
Sbjct: 140 VGCYKNLDVALNCGNMLRECIKYPTLTKVRIEDVAVERSLVAAASGAR 187
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +1
Query: 262 WTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFKQSCF 441
W+ Y L + +L A +RI HM + LN+T I FKQ+ F
Sbjct: 1210 WSFEEAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDM----EFKQNKF 1265
Query: 442 MFP 450
+ P
Sbjct: 1266 LPP 1268
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 325 PTRPISLFGMVKVEYIQQYVSITAAGF-HQRCSQSGHRCTV 206
P+RP+ FG +K E I+ + F H+R +SG+ TV
Sbjct: 16 PSRPVDRFGFIKPEQGTSPDGISKSKFIHERERESGYWLTV 56
>03_01_0282 + 2181598-2183124
Length = 508
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 435 LFYVPRYLWKTWEGGRIKMLVLDLNVPSLKTSASRVVKSY 554
L YVP Y + ++ G L D+ LKT+A+ V+K++
Sbjct: 434 LRYVPSYKFMSFNSGPRTCLGKDMAFVQLKTAAAAVMKNF 473
>02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 513 PSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSL 614
PSL+ S R++ S L ++ R CT+ L D L
Sbjct: 1014 PSLELSDRRILPSQLKEVTVRGCTIHDGFLHDDL 1047
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,125,349
Number of Sequences: 37544
Number of extensions: 456577
Number of successful extensions: 1399
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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