Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00379
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 32 0.43
SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06) 31 1.3
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19) 29 4.0
SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09) 29 4.0
SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99) 29 5.3
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 29 5.3
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 249 DFINDAVNRVTDVLSRRDEKRERDQDNHGGFV 154
D IND N++ +++S R+ + NHGG+V
Sbjct: 534 DTINDERNKINEIISNRNPGKRVQVTNHGGYV 565
>SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 250 PLPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITN 393
P+P +RT G L PS D S + E C P S++ ++ KT + TN
Sbjct: 91 PMPRRSRTIGDLALPPSNKDRS-SKEFFFCYPPSSNNARPKTTESNTN 137
>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
Length = 155
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 455 VAGNIKQDCLKE*HKTNPLIIFVIFNFVLS 366
V G + +C+KE T+PL++FV N +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144
>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
Length = 1828
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = +1
Query: 205 RQYIGDPIDCIVDEIPLPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLN 384
R+ G+ IV PLP +TA T + + TDL R T A S DK+ +
Sbjct: 343 RRATGETTFIIVISDPLPAANKTANATSSATNTTDL--PRRRGTRYRIRARDSVDKSFVK 400
Query: 385 ITNIISGFVLCYSFKQSCFM---FPATCGK 465
N F +F+ F FP TC +
Sbjct: 401 FRNPNPSFSGLLTFEPELFFRARFPITCSR 430
>SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09)
Length = 627
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 338 HVILSDAADKSVRDGESRVYPAVRVHNGSGISSTMQSIGSPMY 210
H IL +A D++ + GES V G+G +S + + PMY
Sbjct: 72 HGILQEAFDEAAKTGESYRLVVVGHSLGAGTASVLSVLLKPMY 114
>SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)
Length = 412
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 107 STLSRFVVVYTSTLS-RFVVVYTSTLSRFVVVYTSTLSRFVVVYSSTLS 154
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 118 STLSRFVVVYTSTLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 165
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/45 (48%), Positives = 25/45 (55%)
Frame = +3
Query: 537 RVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
R V YLST+S R + T TLS + V STLS V YSS S
Sbjct: 188 RFVVVYLSTLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 231
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 52 STLSRFVVVYSSTLS-RFVVVYTSTLSRFVVVYTSTLSRFVVVYSSTLS 99
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 239 STLSRFVVVYSSTLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 286
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 294 STLSRFVVVYSSTLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 341
>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
Length = 710
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 662 STLSRFVVVYTSTLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 709
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 398 STLSRFVVVYSSTLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 445
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 525 TSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*CVKYSSWTS 671
++ SR V Y ST+S R + T TLS + V STLS V YSS S
Sbjct: 651 STLSRFVVVYSSTLS-RFVVVYTSTLSRFVVVYTSTLSRFVVVYSSTLS 698
>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 804
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 307 DLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFK 429
++S ++ + +A S+D+ L ITNIIS F+L SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,478,910
Number of Sequences: 59808
Number of extensions: 526321
Number of successful extensions: 1536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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