Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00379
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.0  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   7.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 501 PGPTS*CGLLPTFSTSSGEHKTGLLERITQNKPT 400
           P P   C    T +  S +   GLL+  T N  T
Sbjct: 745 PSPAEQCASTTTITARSPQGSQGLLQCATSNYST 778


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 385 YLTSSCPSTCGPT 347
           Y+T++ PS CG T
Sbjct: 13  YITAAFPSACGKT 25


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  KGASQARLCVHRQQCVPLTLQSHRDYLDRVLASRHVA 206
           +  +QAR+ +     + + LQ  RD L  ++   HVA
Sbjct: 311 RSTAQARVRMQVVSQLEIQLQKERDRLTAMMHHLHVA 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,910
Number of Sequences: 438
Number of extensions: 4851
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)