Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00379
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28180.1 68418.m03411 kelch repeat-containing F-box family pr...    35   0.065
At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    31   0.81 
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    30   1.9  
At4g04500.1 68417.m00653 protein kinase family protein contains ...    29   2.5  
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    29   3.3  
At4g21930.1 68417.m03172 expressed protein contains Pfam profile...    29   4.3  
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil...    27   9.9  
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR...    27   9.9  

>At5g28180.1 68418.m03411 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif; contains
           Pfam PF00646: F-box domain
          Length = 352

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 402 WVCFV-LFFQAILFYVPRYLWKTWEGGRIKMLVLDLNVPSLKTSASRVVKSYLSTISTRT 578
           W+ F+ LF   +L +V   L+KT+     K+  L L    +    +R+ +SY   +S   
Sbjct: 5   WLIFLWLFVVLVLLFVVSLLYKTFSRKEKKLTFLSLPDEIVLNCLARISRSYYPKLSLVC 64

Query: 579 CTLKTFTLSDSLYVKFSTLST 641
            T +T  +S+ L V    L T
Sbjct: 65  KTFRTLLISNELTVARVQLKT 85


>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 10  PTRGRSARPYSRPRPTRRA-PAMFDVFGSVKGLLKLDSVCIDNN---VFRLH 153
           P   R    + +P P R+A P++ +  GS+KG LKL  +   N     F LH
Sbjct: 309 PKESRGVNTFLQPSPNRKASPSLAERRGSLKGSLKLPGLADSNRGTPAFTLH 360


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = +1

Query: 58  RRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYIGDPIDCI 237
           RRAP    VF S +G  K +    + N F L +    I+++   +++ +  ++ + +D +
Sbjct: 763 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKL 822

Query: 238 VDEIPLPLWT 267
             +   P++T
Sbjct: 823 FVKYVYPVFT 832


>At4g04500.1 68417.m00653 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 646

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 444 VPRYLWKTWEGGRIKMLVLDLNVPSLKTSASRVVK 548
           +P ++WK W  GR   ++  L  PS   S + V+K
Sbjct: 560 LPAFVWKRWIEGRFAEIIDPLAAPSNNISINEVMK 594


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +3

Query: 348 VGPHVEGQDEVKYHKYYQ------WVCFVLFFQAILFYVPRYL 458
           +G H E  D++ ++ Y+       WV F +FF   +FY P  L
Sbjct: 216 LGVHSE-MDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVL 257


>At4g21930.1 68417.m03172 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 183

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -3

Query: 326 SDAADKSVRDGESRVYP-----AVRVHNGSGISSTMQSIGSPMYCRDVTRSENAI 177
           +D AD +  D ES + P     A R  NG G SS    +G  +  RD+ R  +A+
Sbjct: 121 NDNADVADCDWESAMVPPHEYVAARSRNGDGGSSVFLGVGRTLKGRDMRRVRDAV 175


>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 559

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 279 IYSTFTIPNRLIGRVGKDYVQPGV--GPHVEGQDEVKYHKYYQWVCFVLFFQAILFYVPR 452
           I+   ++   ++ R G + ++ GV  G H    D+  + +YY W   V++   +   +PR
Sbjct: 260 IHKRGSLSEPILQRDGLEEIEDGVVNGEHQIVDDDDDHQRYYYWKRLVIWAITLPLNLPR 319

Query: 453 YL 458
            L
Sbjct: 320 IL 321


>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1017

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
 Frame = -3

Query: 479  ASFPRFPQ-VAGNIKQDCLKE*HKTNPL-IIFVIFNFVLSFDMWADAGLHVIL-SDAADK 309
            AS P  P+ +   +  DC        PL  +   F+F   F +  +A   +I  S    K
Sbjct: 798  ASLPELPRSLLTLVADDCESLETVFCPLNTLKASFSFANCFKLDREARRAIIQQSFFMGK 857

Query: 308  SVRDGESRVYPAVRVHNGSGISSTMQSIGSP----MYCRDVTRSENAIKIITVAL*CKR 144
            +V  G  R  PAV  H   G S T++  G+P    ++C  V+R++ + K I  +L  +R
Sbjct: 858  AVLPG--REVPAVFDHRAKGYSLTIRPDGNPYTSFVFCVVVSRNQKSDKTIPPSLLWRR 914


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,104
Number of Sequences: 28952
Number of extensions: 361923
Number of successful extensions: 1045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)