Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00378
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 295 4e-81
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 295 5e-81
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 295 5e-81
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 167 1e-42
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 161 8e-41
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 98 9e-22
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 53 4e-08
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 47 2e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 45 9e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 45 9e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 3e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.002
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 34 0.022
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.066
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.20
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 29 0.62
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 1.1
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 28 1.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 27 2.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.5
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 5.8
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.6
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.6
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 295 bits (724), Expect = 4e-81
Identities = 138/154 (89%), Positives = 145/154 (94%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
GEFEAGISK+GQTREHALLA+TLGVKQLIV V K
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 674
NKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 295 bits (723), Expect = 5e-81
Identities = 137/154 (88%), Positives = 145/154 (94%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
GEFEAGISK+GQTREHALLA+TLGVKQLIV V K
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 674
NKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 295 bits (723), Expect = 5e-81
Identities = 137/154 (88%), Positives = 145/154 (94%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
GEFEAGISK+GQTREHALLA+TLGVKQLIV V K
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 674
NKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 167 bits (407), Expect = 1e-42
Identities = 75/150 (50%), Positives = 105/150 (70%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 244 AERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 423
ER+ G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 424 AGISKNGQTREHALLAFTLGVKQLIVGVTK 513
AG + GQTREHA+LA T G+ L+V + K
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINK 385
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 161 bits (391), Expect = 8e-41
Identities = 76/155 (49%), Positives = 100/155 (64%)
Frame = +1
Query: 49 EMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
E K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+
Sbjct: 170 EQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWL 229
Query: 229 LDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 408
LD + ER G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V +
Sbjct: 230 LDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSS 289
Query: 409 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
FE G +NGQTREHA L LG+ +++V V K
Sbjct: 290 QNNFERGFLENGQTREHAYLLRALGISEIVVSVNK 324
Score = 42.7 bits (96), Expect = 5e-05
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLEPSTKML 677
NK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N+++ + L
Sbjct: 323 NKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDL 378
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 98.3 bits (234), Expect = 9e-22
Identities = 60/152 (39%), Positives = 85/152 (55%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417
E+ GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 418 FEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
QTREH LLA +GVKQ++V + K
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINK 178
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 52.8 bits (121), Expect = 4e-08
Identities = 36/113 (31%), Positives = 51/113 (45%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
N+ +I H+D+GK+T T ++Y G F + G V+D L AER
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 47.2 bits (107), Expect = 2e-06
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ER+
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 256 VGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 378
GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 379 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTKW 516
D AVL++ A +G I+ + Q R + + + K +G W
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPW 215
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 45.2 bits (102), Expect = 9e-06
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 222
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 223 WVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 45.2 bits (102), Expect = 9e-06
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 222
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 223 WVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 43.6 bits (98), Expect = 3e-05
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 256 VGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 34.3 bits (75), Expect(2) = 0.002
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 199 GKGSFKYAWVLDKLKAERDVGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 372
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 373 QADCAVLIVAAGTG 414
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 0.002
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 79 IVVIGHVDSGKST 117
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 33.9 bits (74), Expect = 0.022
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 247 ERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.066
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 307 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 486
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 487 KQLIV 501
K +I+
Sbjct: 163 KHIII 167
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.7 bits (66), Expect = 0.20
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = +1
Query: 85 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERDV 258
++GHVD+GK+ +L + +++ E Q++G F + K K
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 259 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 29.1 bits (62), Expect = 0.62
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 293 SNFQRAISIVIPTSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 162
S F IS+ +PT FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 260 PTSRSAFSLSNTQAYLKDPLPIS-WASFSNFSMVRLSIPPHL 138
PT+ + S + + Y+K P+P S ++S N S++ +PP +
Sbjct: 558 PTNVNYSSCVDPRTYVKTPIPFSKFSSSENLSLIPSLLPPSI 599
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 510 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKML 677
KMD E + E +F + + S++K+ F+PISG G N+ S + L
Sbjct: 418 KMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLTSISQEKL 471
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 244 AERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKN 354
AE+ V I I A + + +T+ID PG DFI N
Sbjct: 67 AEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 2.5
Identities = 27/79 (34%), Positives = 36/79 (45%)
Frame = +1
Query: 397 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTKWIPLNHHTVSPDLRKSRRKYP 576
VA GT E GI NG E+A+ A +I V + P++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 577 HTSRRLATTQLLSLSCPFL 633
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.5
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+ +V GH+ GKS L+Y + + + S +Y L+ ER
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT-DTHYLERERV 189
Query: 256 VGI---TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ I + +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 190 MSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 405
VG D ++K + + + + PGH D I+++ S LI A
Sbjct: 188 VGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 535 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 624
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 238 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 110
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,794
Number of Sequences: 5004
Number of extensions: 59344
Number of successful extensions: 222
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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