Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00378
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 137 7e-33
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 124 7e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 109 3e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 48 9e-06
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.023
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 36 0.040
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 33 0.21
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.37
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.0
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 4.6
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 137 bits (332), Expect = 7e-33
Identities = 60/126 (47%), Positives = 88/126 (69%)
Frame = +1
Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDVGITIDIALWKFETSKYYVT 315
Y G +DKRT+EK+E+EA+E + ++ +W LD + ERD G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 495
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 496 IVGVTK 513
++ V K
Sbjct: 286 VILVNK 291
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 605
NKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 124 bits (299), Expect = 7e-29
Identities = 56/60 (93%), Positives = 58/60 (96%)
Frame = +1
Query: 196 MGKGSFKYAWVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 375
MGKGSFKYAWVLDKLKAER+ GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 109 bits (261), Expect = 3e-24
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Frame = +1
Query: 268 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 447
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 448 TREHALLAFTLGVKQLIVGVTK--WIPLNHHTVSP 546
TREHA+L +LGV QLIV + K + L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = +1
Query: 85 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDVGI 264
+I H D+GK+T T L+ G I +EA + K D ++ ER GI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 265 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 38.3 bits (85), Expect = 0.006
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Frame = +1
Query: 7 ELGYYTQFVIRD*PEMGKEKTHINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE 180
E+ + ++R P+ ++ T I + V+G+V+SGKST G L Y G + + F
Sbjct: 92 EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLF- 149
Query: 181 KEAQEMGKGSFKYAWVLDKLKAERDVGITIDIALWK-----FETSKYYVTIIDAPGHRDF 345
+ E+ G + + + ++ G ++ + + E S +T ID GH +
Sbjct: 150 RHLHEIQSG--RTSSISHEILGFSCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKY 207
Query: 346 IKNMITGTS--QADCAVLIVAAGTG 414
+K I G + D A+L++A G
Sbjct: 208 MKTTIFGLTGHSPDYAMLVIAGNAG 232
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 36.3 bits (80), Expect = 0.023
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 225
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 226 VLDKLKAERDVGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 402
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 403 AGTG 414
+G
Sbjct: 132 CVSG 135
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 35.5 bits (78), Expect = 0.040
Identities = 35/128 (27%), Positives = 54/128 (42%)
Frame = +1
Query: 70 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 249
+ NI V+GHVDSGK++ L + F+K Q +G LD +
Sbjct: 35 NFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----TLDLGFSS 83
Query: 250 RDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 429
V + + E +T++D PGH IK +I G A +I GT E G
Sbjct: 84 FQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGG 135
Query: 430 ISKNGQTR 453
++G+ +
Sbjct: 136 FGQSGKVK 143
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 33.1 bits (72), Expect = 0.21
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Frame = +1
Query: 7 ELGYYTQFVIRD*PEMGKEKTHINIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI- 168
ELG ++++R + + + + V+G+VD+GKST T G L G +R
Sbjct: 209 ELGTVGEYLVRVRMDEN-DFMEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFR 267
Query: 169 EKFEKEA---QEMGKGSFKYAWVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHR 339
K E E+ +G + + G +D A E+SK +T ID GH
Sbjct: 268 HKHEMESGRTSSVGNDILGFDNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHE 326
Query: 340 DFIKNMITG 366
++K I G
Sbjct: 327 RYLKTTIFG 335
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 310 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 259 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 405
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 31.9 bits (69), Expect = 0.49
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
N ++ HVD GKST L+ G I K + K VLDKL+ ER+
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 256 VGITI 270
GIT+
Sbjct: 1987 RGITV 1991
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIV 399
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 319 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 498
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 499 V 501
+
Sbjct: 123 I 123
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 519 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 659
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,346
Number of Sequences: 59808
Number of extensions: 456401
Number of successful extensions: 1305
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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