Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00378
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 304 4e-83
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 303 5e-83
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 303 5e-83
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 241 2e-64
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 190 1e-48
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 190 1e-48
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 173 1e-43
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 83 2e-16
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 83 2e-16
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 81 7e-16
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 81 7e-16
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 81 7e-16
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 52 5e-07
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 50 1e-06
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 43 2e-04
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.005
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 38 0.005
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 36 0.035
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 36 0.035
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 34 0.081
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 33 0.25
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.25
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.25
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 31 0.76
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 31 0.76
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.00
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.3
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.7
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 30 1.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.3
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.3
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.3
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.3
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 5.3
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.0
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 304 bits (746), Expect = 4e-83
Identities = 157/201 (78%), Positives = 163/201 (81%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTKWIPLNHHTVSPDLRKSRRKYPHTSRR 591
GEFEAGISKNGQTREHALLA TLGVKQL + L T SPD +SRR
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL-------VSLRSPTRSPD----------SSRR 163
Query: 592 LATTQLLSLSCPFLDGTETTC 654
T Q L D TETTC
Sbjct: 164 SDTIQRLFHLSQSPDSTETTC 184
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 303 bits (745), Expect = 5e-83
Identities = 143/154 (92%), Positives = 147/154 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
GEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 91.9 bits (218), Expect = 4e-19
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 674
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 208
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 303 bits (745), Expect = 5e-83
Identities = 143/154 (92%), Positives = 147/154 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 411
DKLKAER+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 412 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
GEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 91.9 bits (218), Expect = 4e-19
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 674
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 208
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 241 bits (591), Expect = 2e-64
Identities = 111/117 (94%), Positives = 115/117 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 402
DKLKAER+ GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 91.9 bits (218), Expect = 4e-19
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 674
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 119 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 174
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 190 bits (462), Expect = 1e-48
Identities = 88/151 (58%), Positives = 111/151 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 241 KAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 420
+ ER+ G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 421 EAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
E G GQT+EHALL +LGV QLIV V K
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNK 317
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/52 (34%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 659
NK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 316 NKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 363
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 190 bits (462), Expect = 1e-48
Identities = 88/151 (58%), Positives = 111/151 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 241 KAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 420
+ ER+ G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 421 EAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
E G GQT+EHALL +LGV QLIV V K
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNK 335
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/52 (34%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 659
NK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 334 NKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 381
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 173 bits (420), Expect = 1e-43
Identities = 77/153 (50%), Positives = 108/153 (70%)
Frame = +1
Query: 55 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 234
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 235 KLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
ER+ G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 415 EFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
EFE G + GQTREH++L T GVK L++ V K
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNK 256
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 507 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHG 644
NKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 255 NKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAER 252
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 83.0 bits (196), Expect = 2e-16
Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417
K E+ GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 418 FEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
E QT+EH +LA +GVK + + + K
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINK 170
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 83.0 bits (196), Expect = 2e-16
Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417
K E+ GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 418 FEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
E QT+EH +LA +GVK + + + K
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINK 170
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 81.0 bits (191), Expect = 7e-16
Identities = 53/143 (37%), Positives = 73/143 (51%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417
E+ GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 418 FEAGISKNGQTREHALLAFTLGV 486
QTREH LLA +GV
Sbjct: 150 MP-------QTREHLLLARQVGV 165
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 81.0 bits (191), Expect = 7e-16
Identities = 53/143 (37%), Positives = 73/143 (51%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417
E+ GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 418 FEAGISKNGQTREHALLAFTLGV 486
QTREH LLA +GV
Sbjct: 151 MP-------QTREHLLLARQVGV 166
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 81.0 bits (191), Expect = 7e-16
Identities = 53/143 (37%), Positives = 73/143 (51%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 237
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 238 LKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 417
E+ GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 418 FEAGISKNGQTREHALLAFTLGV 486
QTREH LLA +GV
Sbjct: 151 MP-------QTREHLLLARQVGV 166
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/113 (30%), Positives = 51/113 (45%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
N ++ HVD GKST L+ CG + +K+ +LDKL+ ER+
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ER+
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/113 (32%), Positives = 51/113 (45%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
GITI A + + IID PGH DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 43.2 bits (97), Expect = 2e-04
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 204
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 205 GSFKYAWVLDKLKAERDVG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 372
+ + L+K E G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 373 QADCAVLIVAAGTG 414
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 42.7 bits (96), Expect = 2e-04
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 204
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 205 GSFKYAWVLDKLKAERDVG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 372
+ + L+K E G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 373 QADCAVLIVAAGTG 414
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.1 bits (87), Expect = 0.003
Identities = 40/165 (24%), Positives = 72/165 (43%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 252
+N+ ++GHVDSGK+T T + + + F+ A + +
Sbjct: 14 LNLGILGHVDSGKTTLTRRIA------ELGSTSAFDAHATSTTTDGIR--------RNTL 59
Query: 253 DVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 432
D+G + +L S + +ID PGH I+ ++ ++ D A++I+ + AGI
Sbjct: 60 DLGFSTMTSL-----SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGI 109
Query: 433 SKNGQTREHALLAFTLGVKQLIVGVTKWIPLNHHTVSPDLRKSRR 567
QT EH LLA ++I+ + K +S +K R+
Sbjct: 110 QP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 435
GIT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE---- 243
Query: 436 KNGQTREHALLAFTLGVKQLIVGVTK 513
QT + A V QL+V V K
Sbjct: 244 ---QTAQSIKFAKDANV-QLVVAVNK 265
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.3 bits (85), Expect = 0.005
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 11/173 (6%)
Frame = +1
Query: 28 FVIRD*PEMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 198
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 199 GKGSFKYAWVL------DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 360
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTI 244
Query: 361 TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
G + D +L++ A G G T+EH LA +L V +V VTK
Sbjct: 245 FGMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTK 289
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 35.5 bits (78), Expect = 0.035
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +1
Query: 58 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 234
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 235 KLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ E+ GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 35.5 bits (78), Expect = 0.035
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +1
Query: 58 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 234
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 235 KLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 399
+ E+ GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 34.3 bits (75), Expect = 0.081
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Frame = +1
Query: 28 FVIRD*PEMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 198
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 199 GKGSFKYAWVL------DKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 360
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTI 244
Query: 361 TGTSQ---ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
G + + +L++ A G G T+EH LA +L V +V VTK
Sbjct: 245 FGMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTK 290
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 32.7 bits (71), Expect = 0.25
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 6/169 (3%)
Frame = +1
Query: 25 QFVIRD*PEMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC----GGIDKRTIEKFEKEAQ 192
+ ++R PE ++ + + V+G D GKST G L C G + I +F E +
Sbjct: 154 EVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIFRFPHEVR 212
Query: 193 EMGKGSFKYAWVLDKLKAERDVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 372
GK S V+ + V + E S VT+ID G + K I G +
Sbjct: 213 -TGKTSSVCNDVIGFDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLT 271
Query: 373 --QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVTK 513
A L+VAA + GI+ TREH L L + ++ +TK
Sbjct: 272 GYTPHFACLVVAA-----DRGIT--WATREHLGLIAALNIPMFVL-ITK 312
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.25
Identities = 28/113 (24%), Positives = 46/113 (40%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.25
Identities = 28/113 (24%), Positives = 46/113 (40%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 256 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 414
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 307 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 402
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 518 IHFVTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 384
++ PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 11 LNLFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 316 IIDAPGHRDFIKNMITGTSQADCAVLIV 399
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 29.9 bits (64), Expect = 1.7
Identities = 33/123 (26%), Positives = 54/123 (43%)
Frame = +1
Query: 280 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 459
++KFE+S + +T + K ITGT VL+V+ +F K+ Q
Sbjct: 104 VYKFESSLHRLTFGLTKSRTEDYKTKITGTLGKLQIVLVVSEAFWKFLNKRYKSAQIFFA 163
Query: 460 ALLAFTLGVKQLIVGVTKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLDG 639
F L + + I + W L+ H+ + RKS YP+ A TQ++S +D
Sbjct: 164 FFPNFQLKILECIWHI--WATLDRHSATAVYRKS---YPNA----APTQIVSRRGVLMDL 214
Query: 640 TET 648
+T
Sbjct: 215 AKT 217
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/136 (19%), Positives = 57/136 (41%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 252
+N+ ++GHVDSGK+T T + + + F+ A + +
Sbjct: 14 LNLGILGHVDSGKTTLTRRI------AELGSTSAFDAHATSTTTDGIR--------RNTL 59
Query: 253 DVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 432
D+G + +L S + +ID PGH I+ ++ ++ D A+ +++ + G+
Sbjct: 60 DLGFSTMTSL-----SGRRLALIDCPGHSGLIRAVLAASTVFDMAI-VISESAKKVRKGL 113
Query: 433 SKNGQTREHALLAFTL 480
G ++ +L
Sbjct: 114 KSMGVDENSPIVEMSL 129
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 574 PHTSRRLATTQLLSLSCPFLD 636
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 574 PHTSRRLATTQLLSLSCPFLD 636
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 574 PHTSRRLATTQLLSLSCPFLD 636
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 574 PHTSRRLATTQLLSLSCPFLD 636
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.3
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -1
Query: 495 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 337
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 336 VSRSINDGNIVLASFELPESNIDCDTDVTLSL*FVQYPSI 217
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 310 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 405
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,783
Number of Sequences: 27780
Number of extensions: 337205
Number of successful extensions: 1064
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -